| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 13 (0.040) | 4/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 574 total aligned reads displayed.
CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGC > CP009273/1111013‑1111146 | cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTaa > 1:8434643/1‑68 (MQ=255) gcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAAt < 1:11691917/68‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:17943102‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:3443593‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:11942116‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:18546616‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:19554320‑M1/2‑1 (MQ=255) ccGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGc < 1:22591675/68‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATg < 1:7493352‑M1/3‑1 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc > 1:24674524‑M1/64‑68 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc > 1:18792100‑M1/64‑68 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:30224587‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:2935846‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:30875285‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:18833012‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:27903145‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:27519292‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:23146150‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:31457742‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:34078762‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:16297049‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:5049277‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:5330299‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:14527014‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:6358401‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:7027782‑M1/7‑1 (MQ=255) aCTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCgg > 1:12274945/1‑68 (MQ=255) ggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg > 1:5925034‑M1/61‑67 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:24916927/68‑1 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:9146699/68‑1 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:3563097/68‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:10266822‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:16664629‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:26861475‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:27232254‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:6671030‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:2972410‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:30711838‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:16057518‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:33731873‑M1/9‑1 (MQ=255) tCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt > 1:14104504/1‑67 (MQ=255) tacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGATg > 1:25582553‑M1/58‑67 (MQ=255) gggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:9425042/1‑68 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:6102277/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:10982949/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:20062562/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGCGCGATTTGCTGTGGTAATGCCGGATCCCAt > 1:22315472/1‑67 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:4192482/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:25859334/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:28764504/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:21251621/66‑1 (MQ=255) ggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTc < 1:32103971/67‑1 (MQ=255) gcgcAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTg > 1:8890987/1‑68 (MQ=255) aTCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCa < 1:26150904/68‑1 (MQ=255) tagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCg < 1:31221745/64‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCgg < 1:8304950/66‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCg < 1:26996632/65‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:28400627/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:28949748/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:26418441/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:2162947/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:14981554/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:32926747/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:13406534/1‑68 (MQ=255) gagCTGTTATCGCGAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCCTCCg < 1:13103719/65‑1 (MQ=255) gCTTTTATCGCTAAATCAGGCGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCTGAATg > 1:15345585/1‑68 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGCTGCCATTCTGAAGCATCCGGCATGGgag < 1:17411882/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:4610240/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:10076396/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:18026620/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:19380088/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:7716245/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:20715197/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:10495777/68‑1 (MQ=255) tATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGACGCATCCGGCATGGgaga > 1:8148472/1‑68 (MQ=255) tATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgaga > 1:5557569/1‑68 (MQ=255) tATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgaga > 1:7930033/1‑68 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:13716392/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:11366314/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:31819502/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:23771452/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:15890816/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:3314790/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:19805537/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:24164301/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:31561816/68‑1 (MQ=255) tCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAtt > 1:24405332/1‑68 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:4038409/1‑68 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg < 1:12542419/68‑1 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:19033614/1‑68 (MQ=255) ggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg > 1:30465559/1‑68 (MQ=255) ggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg > 1:21006587/1‑68 (MQ=255) tttGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGaa < 1:327017/67‑1 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:17103036/68‑1 (MQ=255) gCTGGGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:29172010/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCtt < 1:25203022/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCtt < 1:23545789/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt > 1:15552281/1‑67 (MQ=255) atctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt < 1:20413124‑M1/60‑1 (MQ=255) atctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt < 1:24247517‑M1/60‑1 (MQ=255) | CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGC > CP009273/1111013‑1111146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |