| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 13 (0.040) | 4/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 611 total aligned reads displayed.
GCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATA > CP009273/1111044‑1111177 | tttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGga > 1:19956393/1‑68 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGCTGCCATTCTGAAGCATCCGGCATGGgag < 1:17411882/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:10076396/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:32640626/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:2453367/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:4610240/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:11197624/68‑1 (MQ=255) tATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgaga > 1:5557569/1‑68 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:3671801/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:20225553/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:1376247/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:30875207/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:11851694/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:24195344/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:16939702/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:27114890/68‑1 (MQ=255) aggcgttccttcacgctattaaatctcccatgccggatgcttcagaatggcatccggcatGGGAGAt < 1:20837551‑M2/7‑1 (MQ=255) cTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCCGAAGCATCCGGCATGGGAGATTTaa > 1:3383136/1‑68 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:24299758/68‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:14115912/68‑1 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:19033614/1‑68 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg < 1:26887368/68‑1 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:7234473/1‑68 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:4038409/1‑68 (MQ=255) ggggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa > 1:22729235/1‑68 (MQ=255) gATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg < 1:5292306/67‑1 (MQ=255) gCTGGGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:29172010/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCtt < 1:23545789/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt > 1:25704452/1‑67 (MQ=255) atctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt < 1:12757716‑M1/60‑1 (MQ=255) ggTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCg > 1:13406637/1‑68 (MQ=255) TGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgt < 1:9219685‑M1/68‑1 (MQ=255) TGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgt < 1:18796324‑M1/68‑1 (MQ=255) CCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt < 1:33180124‑M1/68‑1 (MQ=255) CCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt < 1:27571776‑M1/68‑1 (MQ=255) CCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt < 1:5029629‑M1/68‑1 (MQ=255) CCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt < 1:28920534‑M1/68‑1 (MQ=255) CCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt < 1:8533636‑M1/68‑1 (MQ=255) CCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt < 1:22344886‑M1/68‑1 (MQ=255) CGGATGGCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCTGGCgtgt > 1:12320717‑M1/1‑67 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt > 1:9010640‑M1/1‑67 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt > 1:19503223‑M1/1‑67 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt > 1:16582771‑M1/1‑67 (MQ=255) TGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGtgttttta < 1:18634374‑M1/68‑3 (MQ=255) GCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGACCGCCTTCCGGGCGTGTTTtaat < 1:3462207‑M1/68‑2 (MQ=255) cTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACg < 1:13088005/68‑1 (MQ=255) cTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACg < 1:18046369/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:34320538/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:29498227/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt > 1:29767905/1‑68 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:28052322/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:1708733/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt > 1:17714786/1‑68 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:31528855/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:25043488/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:19194332/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:4449561/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:23952509/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:23730938/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:21551616/68‑1 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:31749089/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:10394251/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:31432129/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:946336/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:8110234/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:12573961/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:15713001/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:23092288/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtg < 1:26238348/67‑1 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCCACGgtgt > 1:12066262/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGCCGTGTTTTAAAGCGACGgtgt > 1:14537658/1‑68 (MQ=255) gcatccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTa > 1:24835026‑M2/12‑68 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTaa > 1:25242197‑M2/10‑67 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc < 1:16057518‑M2/59‑1 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc < 1:7678833‑M2/59‑1 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc < 1:21941061‑M2/59‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:6703575‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:5951864‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:6358401‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:19655469‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:14949758‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:8241658‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:10668033‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:30224587‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:20467180‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:30618330‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:32923852‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:28464534‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:26566656‑M2/61‑1 (MQ=255) ggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcaca < 1:21060553‑M2/63‑1 (MQ=255) ggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcaca < 1:25812205‑M2/63‑1 (MQ=255) ggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcaca > 1:2738326‑M2/6‑68 (MQ=255) catGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACat < 1:31213118‑M2/64‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:32011750‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:11366324‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:7859129‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat > 1:1886247‑M2/3‑68 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:6180689‑M2/66‑1 (MQ=255) tGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAtata < 1:153772‑M2/67‑1 (MQ=255) tGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAtata < 1:28848789‑M2/67‑1 (MQ=255) | GCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATA > CP009273/1111044‑1111177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |