| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 197 (0.480) | 19 (0.060) | 11/82 | NT | 13.0% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 110 (0.360) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 318 total aligned reads displayed.
TGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAAT > CP009273/1161515‑1161647 | tGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:26111670/1‑68 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:1561959/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:20888104/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:21076687/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGC < 1:13339407‑M1/67‑1 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:20499632/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:5956795/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:15232309/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:19978953/1‑68 (MQ=255) aaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:6295506/1‑67 (MQ=255) aaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:7430171/1‑67 (MQ=255) aaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:7843283/1‑67 (MQ=255) aaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:25879543/1‑67 (MQ=255) tttAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:11197141/1‑65 (MQ=255) aGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaa > 1:15737753/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcggggggtgtagaa > 1:3728557‑M1/1‑51 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcggcgggtgtagaa > 1:5358988‑M1/1‑51 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCgacgggtgtagaaa > 1:18648483‑M1/1‑54 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:25680338/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:10835608/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:10702619/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgtcgggtgtagaac > 1:30561449‑M1/1‑50 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGagcgactggtgtagaac > 1:30854081‑M1/1‑50 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCgaggggtgtagaaa > 1:26803440‑M1/1‑53 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:19650442/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:18831376/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:20565678/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:16337043/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:13926158/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:13765838/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:27202895/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:8850234/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:10136576/1‑68 (MQ=255) ggggTCACGTTGACTAAGCCATAGAAAAATATTCTGATTGTCGGCGGAGGTGCTGGTGGGCTGGAAAt > 1:26590308/1‑68 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:17477602/67‑1 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:13624665/67‑1 (MQ=255) cGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCgacgggggtagaactctcc > 1:29091556‑M1/1‑46 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGagcgactggtgtagaactctcagct > 1:12774508‑M1/1‑42 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:10624558/1‑68 (MQ=255) ttGACTACGCCATAGAAAAAGATTGTGATTGTCGGCGGCGGcgcggggggtgttgaaatctccgcaga > 1:31399931‑M1/1‑41 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGTCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:12662692/1‑67 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:12330092/1‑67 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:24673809/1‑67 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcggcgggtgtagaactctccgctgaatt > 1:32983269‑M1/1‑38 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgacgggtgtagaactctccgctgaatt > 1:25547037‑M1/1‑38 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGagcgcggggtgtcgaactctcaccagaatt > 1:34099413‑M1/1‑38 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:4086003/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:2166147/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:31593742/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:16871501/1‑65 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:28039299/1‑68 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:33901483/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgg > 1:8559367/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgg > 1:30300500/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgg > 1:18488072/1‑68 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:29252315/68‑1 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:9617364/68‑1 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:2011963/68‑1 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:20751818/68‑1 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgacgggtgtagaactctccgctgaaatgcacc > 1:4439015‑M1/1‑32 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:32225402/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:22712118/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:7167483/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:29569811/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:23705317/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:14985318/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:28605814/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:8283029/1‑68 (MQ=255) ttGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATaa < 1:28434578/68‑1 (MQ=255) aaaaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTg > 1:32548605/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGggcgccgggtgtagaactctccgctgaattgcacaacgcggtcaa > 1:19290519‑M1/1‑23 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:28908071/1‑67 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:15343034/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:15475289/1‑67 (MQ=255) tgattgtCGGCGGCGGagcgccgggtgtcgaactctccgctgaattgcaccacgcggtcacgcaaat > 1:14228299‑M1/1‑16 (MQ=255) gattgtCGGCGGCGGcgcgacgggtgttgaaatctccgctgaattgcacaacgcggtcaagcaactgc > 1:14588979‑M1/1‑15 (MQ=255) gattgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc > 1:6893545‑M1/1‑15 (MQ=255) gattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGa > 1:13518010/1‑68 (MQ=255) gattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGa > 1:10033069/1‑68 (MQ=255) gattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGa > 1:33613717/1‑68 (MQ=255) attgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagaaactgc > 1:16593803‑M1/1‑14 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:29978425/1‑68 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca > 1:26435599‑M1/1‑12 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca < 1:5603227‑M1/68‑57 (MQ=255) gtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacag < 1:34382960‑M1/68‑58 (MQ=255) gtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGc < 1:24426265/40‑1 (MQ=255) tCGGCGGCGGggcgacgggggtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca > 1:17983635‑M1/1‑10 (MQ=255) tCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaaaaaa > 1:18305459/1‑68 (MQ=255) gcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctac > 1:23728975‑M1/1‑7 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacgg > 1:4911613‑M1/1‑5 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:12043859‑M1/67‑63 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:18921487‑M1/67‑63 (MQ=255) gcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt > 1:3514055‑M1/1‑4 (MQ=255) gcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt > 1:33427563‑M1/1‑4 (MQ=255) gcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt > 1:2786210‑M1/1‑4 (MQ=255) gcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa > 1:25093356/1‑68 (MQ=255) cggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt < 1:6660174‑M1/67‑65 (MQ=255) cggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt < 1:1146822‑M1/67‑65 (MQ=255) cggTGCTGGGGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa < 1:1609348/67‑1 (MQ=255) ggcgcgacgggtgtagaactctccgctgaattgcacaacgctgtcaagcaactgcacagctacggtt < 1:32917468‑M1/67‑66 (MQ=255) | TGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAAT > CP009273/1161515‑1161647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |