| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 360 (0.870) | 16 (0.050) | 8/90 | NT | 5.4% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 271 (0.810) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 444 total aligned reads displayed.
TTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGA > CP009273/1641244‑1641377 | aaaaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtc < 1:12513470‑M1/1‑1 (MQ=255) gCGGACATTAGCATAGGCTATTTACCATAACGCATCATTACGCGCACCGCCCAGACTGACTCAgcgag > 1:153357/1‑66 (MQ=255) aaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtcgcg > 1:236259‑M1/65‑68 (MQ=255) cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGt > 1:27963147/1‑68 (MQ=255) aaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGt < 1:9629380‑M1/5‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGcgcg < 1:13253438/66‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:14347029/68‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:17158291/68‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:2068752/68‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:11093251/68‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:8405981/68‑1 (MQ=255) aagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGtt < 1:12342370‑M1/6‑1 (MQ=255) aagattgaaaccaagatcgattcggttgagtgcacctccattcatagcgtagactcttaagtCGCGtt > 1:16278315‑M1/63‑68 (MQ=255) gACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt > 1:7620660/1‑67 (MQ=255) agattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGtt < 1:29418510‑M1/6‑1 (MQ=255) ttAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGGCTCAGCGCGTTTCTg > 1:32081320/1‑67 (MQ=255) ttAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTgg < 1:33035739/68‑1 (MQ=255) gCATAGGCTATTTACCATAACGCCTCATTACGCGCACTGCCCAGACTGACTCAGCGCGTTTCTGGCat > 1:34350946/1‑68 (MQ=255) gCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCat > 1:8771264/1‑68 (MQ=255) gCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCat > 1:22355146/1‑68 (MQ=255) cATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:31268186/1‑68 (MQ=255) cATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:2410804/1‑68 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCatat < 1:25826565/68‑1 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:18659903/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:5273827/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:26095652/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:13635353/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGACCATACTGACTAAGCCCGTTTCTGGCata > 1:21064942/1‑67 (MQ=255) aGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATc > 1:27794355/1‑67 (MQ=255) aGGCTATTTACCATAACGCCGCATTACGCGCACCGCCCAGACTGACTCAGCGCGATTCTGGCAtctc > 1:4430504/1‑67 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:7920158/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:3662094/1‑68 (MQ=255) cTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg > 1:8232536/1‑68 (MQ=255) tcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGTTTGTGGGATATCCCCgg < 1:17911945‑M1/22‑1 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg < 1:29907298/67‑1 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg < 1:30152181/67‑1 (MQ=255) ttACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaa > 1:27294450/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCGGTTaa > 1:24827612/1‑67 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:25467756/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:32441493/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:13809954/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:30929594/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:5006042/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:3812683/1‑68 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:12927710/1‑67 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTATGGCATATCCCCGGTaaa > 1:28501273/1‑67 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc < 1:20146084/68‑1 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc > 1:19408826/1‑68 (MQ=255) cATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACa > 1:16777578/1‑68 (MQ=255) aTAACGCCTCATTACGCGCCCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:23462389/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:10023501/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:31706555/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:22938768/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:33233193/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:21390147/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:11305924/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:9045266/1‑68 (MQ=255) aaCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGt > 1:15723179/1‑68 (MQ=255) aCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTa > 1:12717720/1‑68 (MQ=255) aCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTa > 1:30521537/1‑68 (MQ=255) cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTa > 1:34183330/1‑67 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:26294698/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:11766304/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:15235544/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCAGGCTTATCCCCGGTAAAACAAGAAAc > 1:24337981/1‑68 (MQ=255) aTTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacc < 1:2205176/68‑1 (MQ=255) tACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacca > 1:14691019/1‑67 (MQ=255) aCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccac > 1:9317954/1‑67 (MQ=255) aCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccac > 1:34135863/1‑67 (MQ=255) aCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccac > 1:16077309/1‑67 (MQ=255) cgcgCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCAccc < 1:6478184/68‑1 (MQ=255) cgcgCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCAccc > 1:31374675/1‑68 (MQ=255) cgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTTACAAACCACCCGa > 1:2126413/1‑68 (MQ=255) cgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACGACACGa > 1:25233932/1‑68 (MQ=255) cgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGa > 1:17493491/1‑68 (MQ=255) gcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAACCCACCCGaa > 1:27524602/1‑68 (MQ=255) cACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaa > 1:12025025/1‑68 (MQ=255) gccGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaaa > 1:20456474/2‑68 (MQ=255) gCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGa < 1:10678214/68‑1 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:10278672/68‑1 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:5431446/68‑1 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:4731983/68‑1 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:29096334/68‑1 (MQ=255) gactgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACAcc > 1:33359657/1‑68 (MQ=255) ttcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg < 1:9488195‑M1/59‑1 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:33444346/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:28267341/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:7013895/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:21818152/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:16641096/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:19098856/1‑68 (MQ=255) tcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTATCAAACCACCCGAATATGAACACCAGa < 1:6220964‑M1/60‑1 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTACCAAACCACCCGAAAATGACCACCTGAAAc > 1:26761562/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:17364192/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:4599973/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:18244402/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:9128431/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:19871598/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:24636459/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:5729027/1‑67 (MQ=255) | TTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGA > CP009273/1641244‑1641377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |