| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 360 (0.870) | 16 (0.050) | 8/90 | NT | 5.4% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 271 (0.810) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 379 total aligned reads displayed.
CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641311‑1641443 | gcgtttctggtgttcattttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgACt < 1:26682728‑M2/3‑1 (MQ=255) GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:10773771‑M1/1‑67 (MQ=255) GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:14755148‑M1/1‑67 (MQ=255) GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:19720701‑M1/1‑67 (MQ=255) CGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACtt < 1:13599192‑M1/68‑1 (MQ=255) TTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAg > 1:13055969‑M1/1‑68 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa < 1:31809488‑M1/68‑1 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa < 1:16413544‑M1/68‑1 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa > 1:14387376‑M1/1‑68 (MQ=255) ctggtgttcattttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGaa < 1:9488195‑M2/9‑1 (MQ=255) CTGGCATATCCTCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:27026450‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:26051563‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:8782417‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:3516351‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:1133628‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:15442504‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:4736381‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:28465201‑M1/1‑68 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:29636576/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:10058968/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:22238448/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:28975504/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:7221231/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:16734256/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:11931375/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:13211772/1‑67 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCTAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:30922013/68‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:8345544/68‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:4188468/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:521313/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:20934374/68‑1 (MQ=255) tCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCt < 1:6247388/68‑1 (MQ=255) tCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCt < 1:11706527/68‑1 (MQ=255) tCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCt < 1:24839671/68‑1 (MQ=255) tCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCt < 1:21991149/68‑1 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa > 1:18902987/1‑68 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa > 1:12462942/1‑68 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa > 1:14093617/1‑68 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:7635136/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:21225443/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:20433588/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:13442186/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:19372059/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:19052909/68‑1 (MQ=255) cccGGTAAAACAAGTAAAAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:33624872/68‑1 (MQ=255) ttcgggtggtgtgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTATGa < 1:2182962‑M2/21‑1 (MQ=255) cGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGa < 1:9293115/68‑1 (MQ=255) cGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGa < 1:2354790/68‑1 (MQ=255) gTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAAt > 1:12529597/1‑68 (MQ=255) cggggggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTATGAAt < 1:29133880‑M2/23‑1 (MQ=255) tAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:25070261/63‑1 (MQ=255) aaaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATgg > 1:31453333/1‑68 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAATCGCGACTTAAGAATCTACCCTATGAATGGa < 1:31093239/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:1037600/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:5851200/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:30146188/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:8535397/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:33207825/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:16102404/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:2075137/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:19164321/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:22449136/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:10929410/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:27804876/68‑1 (MQ=255) gggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTATGAATGGa < 1:8310132‑M2/26‑1 (MQ=255) aCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGata > 1:1847889/1‑68 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:12863064/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:7829842/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:6779540/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:22865986/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:17824341/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:27986527/68‑1 (MQ=255) aaCAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCAc < 1:1741615/67‑1 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa < 1:9921230/68‑1 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa < 1:9771105/68‑1 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa > 1:3378687/1‑68 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa < 1:3220086/68‑1 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa > 1:8946687/1‑67 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa > 1:3953539/1‑67 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa > 1:18432470/1‑67 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAc < 1:1705949/68‑1 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAc < 1:24628170/68‑1 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:23132137/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:6491623/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:25696379/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:27667426/1‑68 (MQ=255) ccaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg > 1:11482556/1‑68 (MQ=255) caccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGa < 1:24467168/68‑1 (MQ=255) caccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGa < 1:12110312/68‑1 (MQ=255) ccGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:7462736/43‑1 (MQ=255) gAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGa < 1:2632670/68‑1 (MQ=255) aaaaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGATTCGa > 1:15933291/1‑67 (MQ=255) aaaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGAt < 1:23691032/67‑1 (MQ=255) aaaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGAt < 1:19963409/67‑1 (MQ=255) aaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCt > 1:32899861/1‑68 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGtt > 1:33392726/1‑68 (MQ=255) acCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTc > 1:2816249/1‑68 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCt < 1:29418510‑M2/61‑1 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAAAGGATATGCACTCAACCGAATCGATCTTGGATTCAATCtt > 1:34183465‑M2/7‑68 (MQ=255) acgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCttt < 1:9629380‑M2/63‑1 (MQ=255) | CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641311‑1641443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |