| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2006338 = | 381 (0.920) | 15 (0.040) | 10/92 | NT | 5.3% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 220 (0.650) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
Only 100 of 515 total aligned reads displayed.
CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 | tatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCgg < 1:5077947/68‑1 (MQ=255) tatCGGGCATCACATCGTTTACCGCCACGCCGGGTGCACCGAGAGTGAATTTTTCTGCCTGCGTGCgg < 1:32359443/68‑1 (MQ=39) tacaggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCgg > 1:14064295‑M1/65‑67 (MQ=255) atCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCgg > 1:24985004/1‑67 (MQ=255) acaggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGc < 1:15155782‑M1/5‑1 (MQ=255) ccggctacggcgatgtgtgcgcgtgcgcaggaatcactgccgcaaccgacgattagttttgcCGGGCa > 1:29551928‑M1/63‑68 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTGCCGGGGGGTGAATTTTTCTGGCTGCGgggggggcg > 1:22275783/1‑65 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:25637775/1‑67 (MQ=255) gTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAATTTTCTGCCTGCGTGCGGGCa > 1:17384388/1‑66 (MQ=255) tcatcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGc < 1:19171871/67‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:7849795‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:1946272‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:8730314‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:31728717‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgagcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:28737406‑M1/6‑1 (MQ=255) ctacggctatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGc > 1:15779615‑M1/59‑66 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:7466254‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:1865142‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:11057477‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGc > 1:26529791‑M1/59‑66 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGc > 1:20577511‑M1/59‑66 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGc > 1:24609701‑M1/59‑66 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGCt < 1:16777598‑M1/9‑1 (MQ=255) catcaCATCGTTTACCGCCACGCCGGGCTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCt < 1:24759188/67‑1 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCt < 1:11205030/67‑1 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCt < 1:392609/67‑1 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTg < 1:21757119/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:10064032/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:548340/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:13289847/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:26981162/68‑1 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt > 1:32124736/1‑68 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt > 1:4227774/1‑68 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt > 1:9537751/1‑68 (MQ=255) acaTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtg > 1:21501970/1‑68 (MQ=255) cctCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:34162899/66‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:30432787/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:2747155/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:19991073/68‑1 (MQ=255) caTCGTTCTACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:14904406/68‑1 (MQ=255) tCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTgtgt < 1:2526446/68‑1 (MQ=255) tCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTgtgt < 1:2381298/68‑1 (MQ=255) cGTTTAACGCCACGCCGGGTTCACCGATAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa < 1:28660094/68‑1 (MQ=255) gTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:9763027/1‑67 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:27355644/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:9363853/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:26196513/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:34536669/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc > 1:25177760/1‑67 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:23478454/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:11754022/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:1552126/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:13558969/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:13084711/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:1212764/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:21126709/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:2017979/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:19772107/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:12872726/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCa < 1:2843105/68‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCa < 1:29329733/68‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCa < 1:27595980/68‑1 (MQ=255) atAACGCCACGCCGGGTTCACCGAGAGGGAAATTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:20719616/66‑1 (MQ=255) aaCGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACt < 1:3131138/68‑1 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:6014054/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:21924336/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt < 1:2250184/68‑1 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:30632189/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:8976815/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:17907097/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:33154660/1‑68 (MQ=255) ccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:1848176/1‑67 (MQ=255) gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAg < 1:6900069/67‑1 (MQ=255) ttCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAgc < 1:10531046/67‑1 (MQ=255) ttCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAgc > 1:26637798/1‑67 (MQ=255) cactgccgcaaccgaccattagttttgcCGGGGAGCTGTTTGTGTATCACTAATGCGATCGAGcgcg < 1:768683‑M1/39‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:28135183/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:29974932/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:16061872/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:23201293/68‑1 (MQ=255) ctgccgcaaccgaccattagttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg < 1:33892480‑M1/42‑1 (MQ=255) cGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg > 1:8392005/1‑68 (MQ=255) cGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg > 1:6443873/1‑68 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt > 1:14626728/1‑68 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt < 1:16508053/68‑1 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCGGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt < 1:33423331/68‑1 (MQ=255) gTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGc < 1:4096491/66‑1 (MQ=255) gTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCa < 1:17180187/67‑1 (MQ=255) tttCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCg < 1:4837845/68‑1 (MQ=255) tttCTGCCTGCGTGCGGGCAGCTGGTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCg < 1:3746660/68‑1 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc < 1:32636775/68‑1 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc > 1:31429586/1‑68 (MQ=255) attagttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCa < 1:18760446‑M1/57‑1 (MQ=255) gttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa < 1:22902437‑M1/59‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 1:11598356/67‑1 (MQ=255) ttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt < 1:12622136‑M1/62‑1 (MQ=255) tgcgtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt > 1:29053572/1‑68 (MQ=255) tgcgtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt < 1:16308482/68‑1 (MQ=255) gcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATgg < 1:24327116/68‑1 (MQ=255) CGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATgg < 1:18297904‑M1/67‑1 (MQ=255) | CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |