| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2006338 = | 381 (0.920) | 15 (0.040) | 10/92 | NT | 5.3% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 220 (0.650) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
Only 100 of 377 total aligned reads displayed.
TTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTG > CP009273/2006325‑2006459 | ttCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCgg < 1:32225107/68‑1 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc > 1:19696553/1‑68 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc < 1:32636775/68‑1 (MQ=255) cattagttttgccgggcagctgcacgccgcgctcgatcgcattagtgatacacaaacagctgcccgGc < 1:5616625‑M2/2‑1 (MQ=255) gttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa < 1:22902437‑M1/59‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 1:9481797/67‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 1:10080638/67‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 1:11598356/67‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAc < 1:3617150/68‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAc < 1:8518180/68‑1 (MQ=255) ttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt < 1:12622136‑M1/62‑1 (MQ=255) tgcgtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt > 1:23716036/1‑68 (MQ=255) tgcgtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt < 1:16308482/68‑1 (MQ=255) tgccgggcagctgcacgccgcgcgcgatcgcattagtgatacacaaacagctgcccgGCAAAACTAAt < 1:19305185‑M2/11‑1 (MQ=255) tgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATg > 1:24068345/1‑68 (MQ=255) tgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATg > 1:18389852/1‑68 (MQ=255) gggaGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCg > 1:20030614/4‑68 (MQ=255) gcagctgcacgccgcgctcgatcgcattagtgatacacaaacagctgcccgGCAAAACTAATGGTCg < 1:6316220‑M2/16‑1 (MQ=255) cagctgcacgccgcgctcgatcgcattagttatacacaaacacctccccgGCAAAACTAATGGTCgg < 1:15751132‑M2/17‑1 (MQ=255) AGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGt > 1:33508687‑M1/1‑67 (MQ=255) GCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGtt < 1:4960187‑M1/67‑1 (MQ=255) GCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGtt < 1:25817165‑M1/67‑1 (MQ=255) TGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGTTCGGTTGCg < 1:31559334‑M1/68‑1 (MQ=255) TGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGtt > 1:2793274‑M1/1‑65 (MQ=255) ttGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCa < 1:26444757/68‑1 (MQ=255) tgtgTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAg < 1:31219478/68‑1 (MQ=255) cgccgcgctcgatcgcattagtgatacacaaacagctgcccgGCAAAACTAATGGTCGGTTGCGGCAg < 1:33892480‑M2/26‑1 (MQ=255) gtgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGt > 1:7746827/1‑68 (MQ=255) gtgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGt > 1:30586711/1‑68 (MQ=255) gtgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGt > 1:15381497/1‑68 (MQ=255) gtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGa < 1:14208690/68‑1 (MQ=255) tATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAt > 1:13112144/1‑68 (MQ=255) tATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAt > 1:19181194/1‑68 (MQ=255) aTCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt < 1:7187592/68‑1 (MQ=255) tCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:17102763/1‑67 (MQ=255) gctcgatcgcattagagatacccaaacagctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGAtt < 1:27553420‑M2/31‑1 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:30464653/1‑65 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:27110010/1‑65 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:8112024/1‑65 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:7533004/1‑65 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:5931191/1‑65 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:6772591/1‑65 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:4010411/1‑65 (MQ=255) tAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgc < 1:24920334/68‑1 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgca < 1:33197150/68‑1 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:31467163/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:29279150/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:3000812/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:29576167/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:28896868/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:10855820/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:3451749/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:20547558/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:1522491/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:15847078/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:14115462/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:25494894/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:20880362/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:13581029/1‑67 (MQ=255) gCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcac > 1:12284283/1‑68 (MQ=255) gCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcac > 1:5774900/1‑68 (MQ=255) gATCGAGCGCGGCGTGCAGCTGCCCGGCTAAACTAATCATCGGTTGCGGCAGTGATTCCTgcgctcgc > 1:16903821/1‑68 (MQ=255) gATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgc > 1:17653808/1‑68 (MQ=255) gATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacg < 1:28496906/67‑1 (MQ=255) tCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgcgc < 1:18763044/68‑1 (MQ=255) tCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgcg < 1:5200614/67‑1 (MQ=255) cGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGGCGGTTGCGGCAGTGATTCCTgcgcacgcgca < 1:7277188/68‑1 (MQ=255) gAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgcgc > 1:16555185/1‑66 (MQ=255) aGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgcgcac > 1:25121540/1‑67 (MQ=255) gcgcGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACt < 1:10306093/67‑1 (MQ=255) gcgcGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACt < 1:24372761/67‑1 (MQ=255) gcgcGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACt < 1:27381490/67‑1 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCa > 1:6966494/1‑67 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCa > 1:20939532/1‑67 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCa < 1:17808087/67‑1 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCa < 1:4098436/67‑1 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCa > 1:3774678/1‑67 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCATGCGCACGCGCACTCa > 1:26953502/1‑67 (MQ=255) ggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATc < 1:13027018/67‑1 (MQ=255) cgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGcc > 1:21776524/1‑68 (MQ=255) cgTGCAGCTGACCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGc < 1:26643014/67‑1 (MQ=255) gctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCcgtcg > 1:4500007‑M2/9‑64 (MQ=255) gctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:1069555‑M2/9‑66 (MQ=255) gctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:24609701‑M2/9‑66 (MQ=255) gctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:11781843‑M2/9‑66 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:22572977‑M2/7‑64 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:1865142‑M2/7‑64 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:11057477‑M2/7‑64 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:31728717‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:14718277‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:544085‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:22998853‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:2307317‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:29070834‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:802613‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:9299376‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:20691951‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCt < 1:34367601‑M2/61‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTCCGCCAGTGATTCCTGCGCACGCCCACTCAGCGCCGTAg > 1:11190340‑M2/7‑64 (MQ=255) ccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTa > 1:22052766‑M2/4‑67 (MQ=255) | TTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTG > CP009273/2006325‑2006459 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |