| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2312201 | 412 (0.990) | 15 (0.040) | 6/96 | NT | 5.1% | coding (1155/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | CP009273 | = 2312252 | 210 (0.590) | coding (1104/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
Only 100 of 613 total aligned reads displayed.
CACAGATAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCG > CP009273/2312134‑2312267 | cacaGATAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGT < 1:30233833‑M1/68‑1 (MQ=255)cacaGATAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGT < 1:11075716‑M1/68‑1 (MQ=255)cacaGATAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGT < 1:22399882‑M1/68‑1 (MQ=255)cacaGATAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGT < 1:3868411‑M1/68‑1 (MQ=255) acaGATAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGT > 1:29835710‑M1/1‑67 (MQ=255) gATAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGt > 1:4863321/1‑68 (MQ=255) gATAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGt > 1:13424801/1‑68 (MQ=255) tAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTc < 1:2112945/64‑1 (MQ=255) aaTTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTAc < 1:10398652/68‑1 (MQ=255) tttGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACtt < 1:16841373/68‑1 (MQ=255) tttGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTAAGCGCCAGATCGTTACtt > 1:11426094/1‑68 (MQ=255) tGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTaa > 1:33566450/1‑68 (MQ=255) tGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTaa > 1:9143100/1‑68 (MQ=255) tGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTaa > 1:19678433/1‑68 (MQ=255) gCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTaaa < 1:14760142/68‑1 (MQ=255) cGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTaaaa > 1:29150605/1‑68 (MQ=255) tGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGc < 1:29903113/67‑1 (MQ=255) ggCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCa < 1:18274326/68‑1 (MQ=255) ggTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCa < 1:31796277/68‑1 (MQ=255) tCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAat < 1:34111579/53‑1 (MQ=255) tCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGc > 1:22082874/1‑68 (MQ=255) tGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTAc > 1:17215159/1‑67 (MQ=255) tGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTAc > 1:2470746/1‑67 (MQ=255) tGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTAc > 1:20186781/1‑67 (MQ=255) tGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTAc > 1:29030365/1‑67 (MQ=255) tGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACg < 1:19880636/68‑1 (MQ=255) gCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGc < 1:27852139/68‑1 (MQ=255) gCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGc < 1:21703696/68‑1 (MQ=255) cGTAAGCATATTGAGATAGGTATGCGCCAGTgggtatctgcattttgcgtaccgctgatggcgtcaat > 1:12407117‑M1/1‑31 (MQ=255) cGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCa > 1:33263620/1‑68 (MQ=255) cGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCa > 1:7922280/1‑68 (MQ=255) gTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCATCGGTACGCaa > 1:23742015/1‑68 (MQ=255) gTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCaa > 1:5213788/1‑68 (MQ=255) gTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCaa > 1:15766269/1‑68 (MQ=255) aaGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCaaaa > 1:6347091/1‑68 (MQ=255) aaGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCaaa < 1:16223494/67‑1 (MQ=255) aGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAAt < 1:8882334/68‑1 (MQ=255) aGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAAt < 1:4188341/68‑1 (MQ=255) gCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAAt > 1:25443356/1‑67 (MQ=255) gCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAAt > 1:10683431/1‑67 (MQ=255) atatTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATg < 1:15106326/66‑1 (MQ=255) atatTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCa > 1:21415815/1‑68 (MQ=255) atatTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATAATGACGCCATCAGCGGTACGCAAAATGCa < 1:13024741/68‑1 (MQ=255) ttGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt < 1:32297369/68‑1 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:4370162/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:6782293/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:9388234/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:6100381/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:32867417/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:19108351/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:5693985/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:15704430/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:27686509/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:10030161/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:26444/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:25967737/1‑67 (MQ=255) tGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGAt > 1:24212144/1‑67 (MQ=255) gagaTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATa > 1:33908357/1‑67 (MQ=255) gagaTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATa > 1:25213980/1‑67 (MQ=255) agaTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAc > 1:12177900/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:3450823/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:26593913/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATAAAAGCCATCAGCGGTACGCAAATTGCAGAAAccc > 1:18024089/1‑67 (MQ=255) tAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc < 1:31512125/66‑1 (MQ=255) tAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:23102467/1‑66 (MQ=255) tAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:29521039/1‑66 (MQ=255) gTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactg < 1:30552339‑M2/67‑5 (MQ=255) gTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactg < 1:30920410‑M2/67‑5 (MQ=255) gTACGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactg < 1:30764503‑M2/67‑5 (MQ=255) tATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggc < 1:7243169‑M2/68‑7 (MQ=255) tATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactgg > 1:31020172‑M2/1‑62 (MQ=255) cgcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGcgcg > 1:28595142/1‑67 (MQ=255) gcCAGTgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcata < 1:26905328‑M1/68‑63 (MQ=255) gcCAGTgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcata < 1:19035926‑M1/68‑63 (MQ=255) gcCAGTgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcat < 1:18604664‑M1/67‑62 (MQ=255) gcCAGTgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcat > 1:13997971‑M1/1‑6 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGa > 1:28705732/1‑68 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGa > 1:27367025/1‑68 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGa > 1:23586765/1‑68 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGa > 1:22704986/1‑68 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGa < 1:5048264/68‑1 (MQ=255) ccAGTgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcata > 1:2833943‑M1/1‑5 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:15300185/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:17450545/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:5444742/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:7604169/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:25115485/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:8455202/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:31208948/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCACCGGTACGCAAAAAGCAGATACCCACTGGCGCGGAg > 1:10294563/1‑68 (MQ=255) cAGTgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcatacc < 1:20758216‑M1/68‑65 (MQ=255) cAGTgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcatac < 1:23997064‑M1/67‑64 (MQ=255) cAGTgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcatac < 1:19539039‑M1/67‑64 (MQ=255) cAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAgg < 1:32642999/68‑1 (MQ=255) cAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAgg < 1:26997735/68‑1 (MQ=255) cAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAgg < 1:28140083/68‑1 (MQ=255) aGTgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcatacct > 1:27166752‑M1/1‑3 (MQ=255) ttCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCg > 1:5103157/1‑67 (MQ=255) ttCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCg > 1:12819539/1‑67 (MQ=255) tgggtatctgcattttgcgtaccgctgatggcgtcaatattttaagtaacgaactggcgcataccta > 1:12061930‑M1/1‑1 (MQ=255) | CACAGATAATTTGCGTCAGTCGTTGGCGGTCCTCATGCGTAAGCATATTGAGATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCG > CP009273/2312134‑2312267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |