| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2312201 | 412 (0.990) | 15 (0.040) | 6/96 | NT | 5.1% | coding (1155/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | CP009273 | = 2312252 | 210 (0.590) | coding (1104/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
Only 100 of 419 total aligned reads displayed.
GATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGGCGTCGCTT > CP009273/2312185‑2312318 | gaTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:22476546/1‑68 (MQ=255)gaTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:11161940/1‑68 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:10301099/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:26593913/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:29482974/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:18237991/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:17150625/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:32888203/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:3450823/1‑67 (MQ=255) aTAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc > 1:13146294/1‑67 (MQ=255) tAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc < 1:27925100/66‑1 (MQ=255) tAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATAccc < 1:28294819/66‑1 (MQ=255) aGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCact > 1:4093730‑M2/1‑65 (MQ=255) ggTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactg < 1:20758216‑M2/68‑5 (MQ=255) gTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactg < 1:28631464‑M2/67‑5 (MQ=255) tATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggc < 1:7243169‑M2/68‑7 (MQ=255) tATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggc < 1:19067916‑M2/68‑7 (MQ=255) aTGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggc < 1:18604664‑M2/67‑7 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCgg < 1:25262382/67‑1 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGa > 1:27367025/1‑68 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGa > 1:12922171/1‑68 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGa > 1:24931660/1‑68 (MQ=255) gcCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGa > 1:31618787/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:27011016/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:28577260/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:11852965/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:5485250/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:25115485/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:16136306/1‑68 (MQ=255) ccAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAg > 1:3433687/1‑68 (MQ=255) cAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAgg < 1:5306551/68‑1 (MQ=255) cAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAgg < 1:32642999/68‑1 (MQ=255) cAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAgg < 1:27633739/68‑1 (MQ=255) ttCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCg > 1:2350814/1‑67 (MQ=255) ttCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCg > 1:21924542/1‑67 (MQ=255) ttCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCg > 1:5103157/1‑67 (MQ=255) tCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggcgcatacctat > 1:4993978‑M2/1‑51 (MQ=255) tCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggcgcataccta > 1:30700099‑M2/1‑51 (MQ=255) tCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGAc > 1:23804162/1‑68 (MQ=255) gTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGCTACCCACTGGCGCGGAGGCGACaa > 1:29247288/1‑68 (MQ=255) tACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggcgcatacctatctca > 1:27214552‑M2/1‑47 (MQ=255) tACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggcgcatacctatctca > 1:31927533‑M2/1‑47 (MQ=255) tACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggcgcatacctatctca > 1:20973501‑M2/1‑47 (MQ=255) tACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggcgcatacctatctca > 1:21477823‑M2/1‑47 (MQ=255) tACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACaa > 1:10166439/1‑66 (MQ=255) tACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAAt < 1:918914/67‑1 (MQ=255) tACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAAt < 1:24614733/67‑1 (MQ=255) tACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATc < 1:15073451/68‑1 (MQ=255) aCTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCt > 1:7012512/1‑68 (MQ=255) aCTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCt > 1:33973000/1‑68 (MQ=255) aCTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCt > 1:4391560/1‑68 (MQ=255) aaaaTATTGACGCCCTCAGCGGTACCCAAAATGCAGATACCCactggcgcatacctatctcaatatgc > 1:14788020‑M2/1‑42 (MQ=255) aaaaTATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCactggcgcatacctatctcaatatgc > 1:19870388‑M2/1‑42 (MQ=255) aaaaTATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTggg < 1:12621413/68‑3 (MQ=255) aaaaTATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCg < 1:17452392/68‑1 (MQ=255) aaaaTATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCg < 1:30836353/68‑1 (MQ=255) aaaaTATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCg < 1:21717382/68‑1 (MQ=255) aaaaTATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCg < 1:6350352/68‑1 (MQ=255) atatTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGAtt > 1:29760604/1‑68 (MQ=255) atatTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGAtt > 1:4803811/1‑68 (MQ=255) atatTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGAtt > 1:21175856/1‑68 (MQ=255) tatTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTg > 1:33437474/1‑68 (MQ=255) tatTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTg > 1:1332408/1‑68 (MQ=255) atTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGa < 1:25886723/68‑1 (MQ=255) atTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGa < 1:31065470/68‑1 (MQ=255) gccGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGa > 1:29085936/3‑65 (MQ=255) gACGCCATCAGCGGTACGCAATATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACt < 1:5892646/68‑1 (MQ=255) gACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACt < 1:16483523/68‑1 (MQ=255) cGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGc < 1:22653984/68‑1 (MQ=255) cGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGc < 1:30012722/68‑1 (MQ=255) cGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGc < 1:5634432/68‑1 (MQ=255) cGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGc < 1:12298114/68‑1 (MQ=255) cGCCAGCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCTACAATCTTGCGATTGAACTGc < 1:28347393/68‑1 (MQ=255) gCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCt < 1:33633906/68‑1 (MQ=255) ccATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTc > 1:22289620/1‑68 (MQ=255) aTCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCAt < 1:15609669/68‑1 (MQ=255) aGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGt > 1:33168616/1‑67 (MQ=255) aGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGt > 1:14167313/1‑67 (MQ=255) cGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGttct > 1:5992705/1‑68 (MQ=255) cGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGttct > 1:6778916/1‑68 (MQ=255) ggTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGttct > 1:20487853/1‑67 (MQ=255) aCGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCa < 1:19698155/68‑1 (MQ=255) aCGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCa < 1:26961320/68‑1 (MQ=255) gCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAg > 1:6238083/1‑67 (MQ=255) gCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAg > 1:663486/1‑67 (MQ=255) gCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAg > 1:7767671/1‑67 (MQ=255) gCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGt < 1:13838178/68‑1 (MQ=255) aaaaTGCATATACCAACTGGCGCGGAGGAGACAATCTTGCTATTGAACTGATAATGTTCTTCCAGt < 1:19427595/66‑1 (MQ=255) aaaTGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGc > 1:16710585/1‑68 (MQ=255) tGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAgg < 1:24260337/68‑1 (MQ=255) gCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAgg > 1:8599954/1‑67 (MQ=255) cAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGGc > 1:16917246/1‑68 (MQ=255) aGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGGc < 1:26412724/67‑1 (MQ=255) tACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGGCGTc > 1:10731765/1‑67 (MQ=255) aCCCACTGGCGCGGAGGCGAAAATCTTGCGATTGAACTGCACATGTTCTTCCAGTCGCAGGGCgac > 1:25435756/1‑64 (MQ=255) cccACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGTCGTCGCt > 1:28984479/1‑68 (MQ=255) cccACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGGCGTCGCt > 1:30972453/1‑68 (MQ=255) cccACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGGCGTCGCt < 1:7570552/68‑1 (MQ=255) cccACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGGCGTCGCt > 1:8060568/1‑68 (MQ=255) cccACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGGCGTCGCt < 1:31226703/68‑1 (MQ=255) | GATAGGTATGCGCCAGTTCGTTACTTAAAATATTGACGCCATCAGCGGTACGCAAAATGCAGATACCCACTGGCGCGGAGGCGACAATCTTGCGATTGAACTGCTCATGTTCTTCCAGTCGCAGGGCGTCGCTT > CP009273/2312185‑2312318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |