| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2747582 = | 392 (0.950) | 26 (0.070) | 5/94 | NT | 8.2% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 252 (0.720) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
Only 100 of 496 total aligned reads displayed.
AATCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTA > CP009273/2747516‑2747649 | aaTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcc < 1:12936939/68‑1 (MQ=255) aTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcct < 1:6125543/68‑1 (MQ=255) aTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcct < 1:27467673/68‑1 (MQ=255) aTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcct < 1:2547777/68‑1 (MQ=255) tCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcct > 1:3704519/1‑67 (MQ=255) tCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTg < 1:10001632/68‑1 (MQ=255) agaggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCt < 1:23134898‑M1/3‑1 (MQ=255) agaggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCTg > 1:10252054‑M1/65‑68 (MQ=255) gaggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCTGc < 1:7041808‑M1/5‑1 (MQ=255) cGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGc > 1:9887909/1‑68 (MQ=255) ggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCTGCa < 1:28686092‑M1/6‑1 (MQ=255) tatCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGc < 1:11460563/68‑1 (MQ=255) tatCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGc < 1:5078598/68‑1 (MQ=255) tatCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGc < 1:16607540/68‑1 (MQ=255) tttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCTGCAGc > 1:26150868‑M1/60‑67 (MQ=255) tCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg > 1:30579308/1‑67 (MQ=255) tCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg > 1:17979142/1‑67 (MQ=255) tCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGt < 1:8504627/68‑1 (MQ=255) ggTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTc > 1:16028389/1‑67 (MQ=255) tACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCAc < 1:33448137/67‑1 (MQ=255) tACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCAc > 1:11770726/1‑67 (MQ=255) tACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCAc < 1:9064784/67‑1 (MQ=255) aCGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACt < 1:21591882/67‑1 (MQ=255) aCGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACt < 1:1892544/67‑1 (MQ=255) cGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCg < 1:2771451/68‑1 (MQ=255) cGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCg < 1:33762216/68‑1 (MQ=255) cGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCg < 1:785134/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCt < 1:21804198/67‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:7403321/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:23585009/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:22652137/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:8020481/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:20799941/68‑1 (MQ=255) aTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGc > 1:31898597/1‑68 (MQ=255) tCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAg < 1:13197067/68‑1 (MQ=255) tCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAg < 1:13985265/68‑1 (MQ=255) cAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt < 1:30859014/68‑1 (MQ=255) aGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt > 1:8343852/1‑67 (MQ=255) cAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt > 1:29039896/1‑65 (MQ=255) cAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt > 1:31285702/1‑65 (MQ=255) aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACt < 1:4442811/67‑1 (MQ=255) aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc < 1:19422343/68‑1 (MQ=255) aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc < 1:10642067/68‑1 (MQ=255) ccACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCACCGTCACTCGCTGCAGGTACTGCt > 1:5699293/1‑67 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCGCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:34395216/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:15414167/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:11007785/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:24367997/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:28936634/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:30014169/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:32422460/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:6528893/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:31589865/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:7278747/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:15592777/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:13325150/66‑1 (MQ=255) cgcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt > 1:22425651/1‑68 (MQ=255) cgcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt > 1:10895085/1‑68 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:26945514/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:25925898/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:8745238/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:12579190/67‑1 (MQ=255) gAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgc < 1:21120539/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGGGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:4838286/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:27287504/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:25084454/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc > 1:24234005/1‑68 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:423973/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:29669194/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:16501657/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:1053030/67‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:6800194/67‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:33048994/67‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:23393127/67‑1 (MQ=255) aGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTCGCGCAt > 1:32702119/1‑68 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTCCTGCTTCTCAGGTAGAGCATaa > 1:21372334/1‑67 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:9206621/68‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:18427688/68‑1 (MQ=255) gcgctacctgagaagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATaa < 1:15094747‑M1/47‑1 (MQ=255) gctacctgagaagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGcc < 1:17373849‑M1/50‑1 (MQ=255) cAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAcc < 1:14501968/68‑1 (MQ=255) aaCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAcc > 1:19899530/1‑67 (MQ=255) ccGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa < 1:26519344/68‑1 (MQ=255) cGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa > 1:20442983/1‑67 (MQ=255) cGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCGCAGGTAGCGCATAAGCCCCCTCa > 1:6636171/1‑67 (MQ=255) cgcgCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:1695401/67‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:5262026‑M1/59‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:1769424‑M1/59‑1 (MQ=255) agcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATACGCCCCCTCAACGGc < 1:14894779‑M1/61‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGcta > 1:34226629/1‑66 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCaa > 1:23759192/1‑68 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCaa > 1:1211242/1‑68 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCa < 1:16800814/67‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCa < 1:1361069/67‑1 (MQ=255) cccTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAt > 1:28273361/1‑68 (MQ=255) cctcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtt > 1:4070470/1‑68 (MQ=255) cctcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAt < 1:11992081/67‑1 (MQ=255) aCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCCCCTCAACGGCAAtttt < 1:24615117‑M1/67‑1 (MQ=255) CCTGCAGCGTCCCTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtttt < 1:20174632‑M1/67‑1 (MQ=255) CCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa > 1:15168125‑M1/1‑68 (MQ=255) | AATCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTA > CP009273/2747516‑2747649 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |