| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2747582 = | 392 (0.950) | 26 (0.070) | 5/94 | NT | 8.2% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 252 (0.720) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
Only 100 of 630 total aligned reads displayed.
CAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTC > CP009273/2747538‑2747671 | cAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt < 1:30859014/68‑1 (MQ=255) cAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt > 1:31285702/1‑65 (MQ=255) cAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt > 1:13214312/1‑65 (MQ=255) aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc < 1:10642067/68‑1 (MQ=255) aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc < 1:6167382/68‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:7072848‑M2/8‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:6776794‑M2/8‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:8184226‑M2/8‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:17694205‑M2/8‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:5262026‑M2/8‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:31676248‑M2/8‑1 (MQ=255) cgttgaggtggcgtatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:24782554‑M2/8‑1 (MQ=255) cgttgagggggcttatgcgctacctgagaagcagtacctgcagcgagagacgctgcaggTACTGCtt < 1:20740460‑M2/8‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCTAGCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:3069744/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:28936634/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:24367997/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:16537544/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:15490787/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:1175837/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:7284862/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:14375239/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:7980335/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:33748011/66‑1 (MQ=255) cACTCGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:27120940/67‑1 (MQ=255) aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct < 1:11466392/68‑1 (MQ=255) aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct < 1:26573146/68‑1 (MQ=255) ggCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAg > 1:16328371/1‑68 (MQ=255) cgcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt > 1:884855/1‑68 (MQ=255) cgcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt > 1:10895085/1‑68 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:25702227/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:12579190/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:16756087/67‑1 (MQ=255) gAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgc < 1:21120539/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGGGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:4838286/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTTCAGGTACTGCTTCTCAGGTAgcgc < 1:26887598/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:32471035/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:23393127/67‑1 (MQ=255) ttatgcgctacctgagaagccgtacctgcagcgagtgacgctgcaggTACTGCTTCTCAGGTAgcgc < 1:27807263‑M2/20‑1 (MQ=255) aGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCAt > 1:10412122/1‑68 (MQ=255) cttcttCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATaa > 1:22499031/1‑68 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:20244478/68‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:15038047/68‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:7751050/68‑1 (MQ=255) ttcttcAACATTCGCGCCCTCCTGAAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:24211340/68‑1 (MQ=255) gcgctacctgagaagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATaa < 1:28789837‑M1/47‑1 (MQ=255) gcgctacctgagaagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATaa < 1:26242555‑M1/47‑1 (MQ=255) ttcAACCGTCGCGCGCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCa < 1:8498438/68‑1 (MQ=255) aaCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAcc > 1:19899530/1‑67 (MQ=255) aCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCCCCTc > 1:5815484/1‑68 (MQ=255) ccGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTcc > 1:1579373/1‑67 (MQ=255) cGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa > 1:8674583/1‑67 (MQ=255) cGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCGCAGGTAGCGCATAAGCCCCCTCa > 1:6636171/1‑67 (MQ=255) cgcgCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:21816111/67‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCGACCTCAACg < 1:26062908‑M1/59‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:28454878‑M1/59‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTCCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:22637725‑M1/59‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCaa > 1:1211242/1‑68 (MQ=255) tcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtttt < 1:27306716/68‑1 (MQ=255) aCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCCCCTCAACGGCAAtttt < 1:24615117‑M1/67‑1 (MQ=255) CTGCAGCGTCAGTCGCTGCAGGTACTGCTTCTCAGGTGGCGCATAAGCCACGTCAACGGCAATTTTAc > 1:13517192‑M1/1‑68 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa < 1:3450424‑M1/67‑1 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:10030836‑M1/1‑68 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:9158820‑M1/1‑68 (MQ=255) GCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa < 1:29251771‑M1/65‑1 (MQ=255) GCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa < 1:28020747‑M1/65‑1 (MQ=255) CAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:17039406‑M1/68‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCACCGGCAATTTTACCTg < 1:9374276‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCACCGGCAATTTTACCTg < 1:31915042‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:17810486‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:4239159‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:1872407‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:14033017‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:11158406‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:30332131‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:29644825‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGAAGCGCATAAGCCACCTCAACGGCAATTTtaccgg < 1:14614760‑M1/67‑3 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:3409775‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:9731704‑M1/67‑1 (MQ=255) CGTCACTCGCTGAAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTCGCa < 1:15313714‑M1/68‑1 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc > 1:18261717‑M1/1‑66 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc > 1:12742359‑M1/1‑66 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:17351517/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:27474163/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:4459504/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:5131276/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:21542072/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTg < 1:28645683/68‑1 (MQ=255) tCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTaa > 1:4049885/1‑68 (MQ=255) tCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTaa > 1:21274441/1‑68 (MQ=255) tCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTaa > 1:23816558/1‑68 (MQ=255) gctgcaggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTaaa > 1:15161978‑M2/9‑67 (MQ=255) aggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACctct < 1:13676556‑M2/64‑1 (MQ=255) aggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACctct < 1:23134898‑M2/64‑1 (MQ=255) ggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCtt > 1:33300260‑M2/3‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCACCGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:32844787/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:18433212/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:6556634/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:25138013/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:19393463/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:29981180/1‑67 (MQ=255) | CAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTC > CP009273/2747538‑2747671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |