| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3143910 = | NA (NA) | 4 (0.010) | 3/90 | NT | NA | intergenic (+5/+267) | yghA/exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
| ? | CP009273 | 3143939 = | NA (NA) | noncoding (27/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | |||||
Only 100 of 513 total aligned reads displayed.
CAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCC > CP009273/3143843‑3143977 | cAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTaaaaaaa > 1:28399637/1‑68 (MQ=255) aatcttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgat < 1:718189‑M1/2‑1 (MQ=255) atcttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgat < 1:5845438‑M1/2‑1 (MQ=255) tcttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgatg < 1:2382970‑M1/3‑1 (MQ=255) tcttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgatg < 1:162613‑M1/3‑1 (MQ=255) tcttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgatg < 1:18898487‑M1/3‑1 (MQ=255) tcttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgatg < 1:29160869‑M1/3‑1 (MQ=255) tcttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgatg < 1:32153566‑M1/3‑1 (MQ=255) tcttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGc > 1:28196809‑M1/65‑68 (MQ=255) gAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATg > 1:31468366/1‑67 (MQ=255) cttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGc < 1:14933083‑M1/4‑1 (MQ=255) cttcatgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGc < 1:33428526‑M1/4‑1 (MQ=255) aGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGc > 1:4515056/1‑67 (MQ=255) aGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGc > 1:19929068/1‑67 (MQ=255) gTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGccc > 1:27287412/1‑68 (MQ=255) gTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGccc > 1:32772363/1‑68 (MQ=255) gTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGccc > 1:23312633/1‑68 (MQ=255) gTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGccc > 1:19678013/1‑68 (MQ=255) tgAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCgg > 1:32430986/2‑68 (MQ=255) cGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCgg > 1:18329382/1‑68 (MQ=255) cGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCg < 1:34473568/67‑1 (MQ=255) gAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGt < 1:2458125/68‑1 (MQ=255) gAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGt < 1:15579280/68‑1 (MQ=255) gAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGt < 1:33707112/68‑1 (MQ=255) gAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGt < 1:6439835/68‑1 (MQ=255) gAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGt < 1:535176/68‑1 (MQ=255) gAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGt < 1:7598349/68‑1 (MQ=255) tgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGCCCGGtt < 1:15394157‑M1/10‑1 (MQ=255) tgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGCCCGGtt < 1:237296‑M1/10‑1 (MQ=255) tgcgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGCCCGGtt < 1:13643747‑M1/10‑1 (MQ=255) cgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGCCCGGtt < 1:33066993‑M1/10‑1 (MQ=255) cgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGCCCGGtt < 1:14212511‑M1/10‑1 (MQ=255) cgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGCCCGGtt < 1:26533922‑M1/10‑1 (MQ=255) cgtttgtaggcggataaggcgttttcgccacatcaggtaagagtgaattcacaatgATGCCCGGtt < 1:12773618‑M1/10‑1 (MQ=255) tACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTtgtg > 1:23127787/1‑68 (MQ=255) tACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTtgt < 1:7514021/67‑1 (MQ=255) tACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTtgt < 1:13213517/67‑1 (MQ=255) tACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTtgt < 1:23559988/67‑1 (MQ=255) cGTCAGCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGaa < 1:10088803/68‑1 (MQ=255) tCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTtgtg > 1:2095511/1‑64 (MQ=255) tCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGaaaa > 1:11945903/1‑68 (MQ=255) tCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGaaaa > 1:25083732/1‑68 (MQ=255) tCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGaaaa > 1:6160665/1‑68 (MQ=255) cACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGaaaa < 1:14553771/67‑1 (MQ=255) aCCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGc < 1:13054300/68‑1 (MQ=255) ccGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCa < 1:21261640/68‑1 (MQ=255) gCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCaa > 1:33262881/1‑67 (MQ=255) aGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAAcc < 1:29407983/67‑1 (MQ=255) aGTGCCCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGc > 1:21594794/1‑68 (MQ=255) aGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCgg < 1:25384876/66‑1 (MQ=255) aGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCgg < 1:22828426/66‑1 (MQ=255) aGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCgg < 1:16734416/66‑1 (MQ=255) aGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGc > 1:5152974/1‑68 (MQ=255) aGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGc > 1:3763963/1‑68 (MQ=255) aGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGc > 1:27940364/1‑68 (MQ=255) aGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGc > 1:17810802/1‑68 (MQ=255) aGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGc > 1:19115234/1‑68 (MQ=255) tGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGca > 1:30530237/1‑67 (MQ=255) gCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatc < 1:21701400/68‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat < 1:27569334/68‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat > 1:27000061/1‑68 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat < 1:15148749/68‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat < 1:30979529/68‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat > 1:18506101/1‑68 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatca < 1:4937960/67‑1 (MQ=255) ggCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtg > 1:897471/1‑68 (MQ=255) ggCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtg > 1:32569399/1‑68 (MQ=255) ggCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtg < 1:29822853/68‑1 (MQ=255) gCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtgt > 1:9512971/1‑68 (MQ=255) gtgtGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtgtg < 1:12230527/67‑1 (MQ=255) gtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGaa < 1:31133442/67‑1 (MQ=255) gtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGaa < 1:5586172/67‑1 (MQ=255) cggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTc > 1:2200981/1‑67 (MQ=255) cggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTc > 1:30211583/1‑67 (MQ=255) cggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTc > 1:10429097/1‑67 (MQ=255) tgcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAc < 1:9831273/67‑1 (MQ=255) ggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAc < 1:20495827/68‑1 (MQ=255) ggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAc < 1:786180/68‑1 (MQ=255) ggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAc < 1:13975805/68‑1 (MQ=255) cggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAct < 1:941638/67‑1 (MQ=255) cggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAct < 1:28598631/67‑1 (MQ=255) ggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCActct < 1:4077193/68‑1 (MQ=255) ggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCActct > 1:19375804/1‑68 (MQ=255) ggcgAGCATTTAGGTCAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCActc < 1:25875408/67‑1 (MQ=255) gAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTa < 1:26335739/67‑1 (MQ=255) gAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTa < 1:4830620/67‑1 (MQ=255) gAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTa < 1:14339569/67‑1 (MQ=255) gAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTa < 1:11032051/67‑1 (MQ=255) gAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTAc < 1:24285733/68‑1 (MQ=255) aTTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCt < 1:11751998/66‑1 (MQ=255) aTTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCt < 1:9140073/66‑1 (MQ=255) aTTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGa < 1:15956698/68‑1 (MQ=255) tAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGAtgt < 1:6732609/68‑1 (MQ=255) ggTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGAtgtg > 1:19342711/1‑67 (MQ=255) ggTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGAtgtg > 1:30764658/1‑67 (MQ=255) gatAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCAACATTGTGAATTCACTCTTACCTGATGTGGc > 1:31786217/3‑68 (MQ=255) gTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAATCTTACCTGATGTGGc > 1:8337771/1‑68 (MQ=255) aaaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAAc > 1:20086488/1‑68 (MQ=255) aaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACg < 1:12526769/68‑1 (MQ=255) aaTGCCAGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGc < 1:20717955/68‑1 (MQ=255) | CAGGAGTCGAGCTACGTCACCGCAGAAGTGCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCC > CP009273/3143843‑3143977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |