| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3143910 = | NA (NA) | 4 (0.010) | 3/90 | NT | NA | intergenic (+5/+267) | yghA/exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
| ? | CP009273 | 3143939 = | NA (NA) | noncoding (27/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | |||||
Only 100 of 443 total aligned reads displayed.
GCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATT > CP009273/3143872‑3144004 | gCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatc < 1:30227077/68‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat > 1:21152825/1‑68 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat < 1:15148749/68‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat > 1:14369604/1‑68 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat < 1:32938920/68‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat < 1:1913781/68‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat > 1:23067340/1‑68 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat < 1:13095703/68‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatca < 1:14213270/67‑1 (MQ=255) aCGGCGTGTGCGGCGGCGAGCAATTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGcatcat < 1:4586479/68‑1 (MQ=255) cGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCAtt < 1:6883171/68‑1 (MQ=255) ggCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtg < 1:26327784/68‑1 (MQ=255) ggCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtg > 1:32569399/1‑68 (MQ=255) gCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtgt > 1:33899702/1‑68 (MQ=255) gCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtgt > 1:10985225/1‑68 (MQ=255) gtgtGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtgtg < 1:18532815/67‑1 (MQ=255) gtgtGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATtgtg < 1:12230527/67‑1 (MQ=255) gtgtGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGa < 1:12555702/68‑1 (MQ=255) gggtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGGGAAAAGCAACCGGGCATCATTGTGa < 1:6079540/66‑1 (MQ=255) gtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGaa < 1:18696649/67‑1 (MQ=255) gtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGaa < 1:27591397/67‑1 (MQ=255) gtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGaa < 1:26516770/67‑1 (MQ=255) gtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGaa < 1:16999869/67‑1 (MQ=255) gtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGaa < 1:25205249/67‑1 (MQ=255) gtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGaa < 1:24459552/67‑1 (MQ=255) gtgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGGTGTGAAAAGCAACCGGGCATCATTGTGaa < 1:27122025/67‑1 (MQ=255) tgCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAAt > 1:30973700/1‑67 (MQ=255) gcggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTAGTGAAAAGCAACCGGGCATCATTGTGAATTc > 1:4107104/1‑68 (MQ=255) cggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTc > 1:23587551/1‑67 (MQ=255) cggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTc > 1:10429097/1‑67 (MQ=255) catcaggtaagagtgaattcacaatgatgcccggttgcttttcacaaccgggcatCATTGTGAATTCa < 1:4012480‑M2/13‑1 (MQ=255) tgcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAc < 1:9831273/67‑1 (MQ=255) ggcggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAc < 1:20495827/68‑1 (MQ=255) tcaggtaagagtgaattcacaatgatgcccggttgcttttcacaaccgggcatCATTGTGAATTCAct < 1:9577046‑M2/15‑1 (MQ=255) cggcgAGCATTTAGGTTAAAAAAATGCCGGGATGTGAAAAGCAACCGGGCACCATTGTGAATTCAct < 1:15014345/67‑1 (MQ=255) cggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAct < 1:27835768/67‑1 (MQ=255) cggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAct < 1:28517233/67‑1 (MQ=255) cggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAct < 1:33519503/67‑1 (MQ=255) cggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAct < 1:28598631/67‑1 (MQ=255) cggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAct < 1:29102360/67‑1 (MQ=255) cggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCAct < 1:18440778/67‑1 (MQ=255) ggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCActct > 1:19413449/1‑68 (MQ=255) ggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCActct > 1:2492796/1‑68 (MQ=255) ggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCActct > 1:19270827/1‑68 (MQ=255) ggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCActct > 1:30826716/1‑68 (MQ=255) ggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCActct < 1:33416518/68‑1 (MQ=255) ggcgAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCActct > 1:9281723/1‑68 (MQ=255) gAGCATTTAGTTTAAAAAAATGCCATGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTa < 1:29942672/67‑1 (MQ=255) gAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTa < 1:8860483/67‑1 (MQ=255) gAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTa < 1:17856513/67‑1 (MQ=255) aTTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGa > 1:10126810/1‑68 (MQ=255) aTTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGa < 1:15956698/68‑1 (MQ=255) ggTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTGACTCTTACCTGAtgtg > 1:16711008/1‑67 (MQ=255) ggTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGAtgtg > 1:34490764/1‑67 (MQ=255) ggTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGAtgtg > 1:13791390/1‑67 (MQ=255) ttAAAAAAATGCCCGGTTGTGTAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTgg < 1:33095965/66‑1 (MQ=255) aaaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAAc > 1:20086488/1‑68 (MQ=255) aaaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAAc > 1:19360174/1‑68 (MQ=255) aaaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAAc > 1:7760736/1‑68 (MQ=255) aaaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAAc > 1:21352430/1‑68 (MQ=255) aaaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAAc > 1:33255723/1‑68 (MQ=255) aaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAAc > 1:5657014/1‑67 (MQ=255) aaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACg < 1:118857/68‑1 (MQ=255) aaaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACg < 1:21701117/68‑1 (MQ=255) aaTGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGc < 1:4831402/68‑1 (MQ=255) aaTGCCAGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGc < 1:20717955/68‑1 (MQ=255) GCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCtt < 1:19791073‑M1/68‑1 (MQ=255) TGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGcc > 1:23328551‑M1/1‑68 (MQ=255) TGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGc > 1:22051383‑M1/1‑67 (MQ=255) TGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGc > 1:25896541‑M1/1‑67 (MQ=255) TGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGc > 1:28204673‑M1/1‑67 (MQ=255) TGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGc > 1:30431942‑M1/1‑67 (MQ=255) TGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGc > 1:25639202‑M1/1‑67 (MQ=255) TGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGc > 1:29560594‑M1/1‑67 (MQ=255) aaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACac > 1:2269715/1‑67 (MQ=255) aaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACaa > 1:5107152/1‑68 (MQ=255) aaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACaa > 1:24167657/1‑68 (MQ=255) aaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACaa > 1:18218693/1‑68 (MQ=255) aaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACaa > 1:11449345/1‑68 (MQ=255) aaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACaa > 1:9026365/1‑68 (MQ=255) aaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACaa > 1:26863549/1‑68 (MQ=255) aaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACaa > 1:31759112/1‑68 (MQ=255) aaccgggcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACg < 1:15381331‑M2/56‑1 (MQ=255) aaccgggcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACg < 1:14067345‑M2/56‑1 (MQ=255) aaccgggcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCa < 1:31456179‑M2/58‑1 (MQ=255) aaccgggcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCa < 1:13643747‑M2/58‑1 (MQ=255) cgggcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGa > 1:13370607‑M2/8‑68 (MQ=255) gcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAg < 1:5487417‑M2/63‑1 (MQ=255) gcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAg < 1:32434747‑M2/63‑1 (MQ=255) gcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAg < 1:9477597‑M2/63‑1 (MQ=255) gcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCAGGAAg < 1:14816054‑M2/63‑1 (MQ=255) catCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGa < 1:12855145‑M2/64‑1 (MQ=255) catCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGa < 1:6497323‑M2/64‑1 (MQ=255) catCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGa < 1:2382970‑M2/64‑1 (MQ=255) catCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGa < 1:8193143‑M2/64‑1 (MQ=255) catCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGa < 1:32153566‑M2/64‑1 (MQ=255) catCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGa < 1:162613‑M2/64‑1 (MQ=255) atCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGAtt < 1:718189‑M2/66‑1 (MQ=255) atCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGAtt < 1:758754‑M2/66‑1 (MQ=255) atCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGAt < 1:15576650‑M2/65‑1 (MQ=255) | GCACGGCGTGTGCGGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATT > CP009273/3143872‑3144004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |