New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3615265	NA (NA)	5 (0.010)	3/100	NT	100%	coding (2714/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor
	?	CP009273	= 3615283	0 (0.000)					coding (2732/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor

GTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCC  >  CP009273/3615213‑3615325                                                     |                                                             gTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCT                                               >  1:12537321‑M2/1‑68 (MQ=255) gTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCT                                               >  1:4674812‑M2/1‑68 (MQ=255) gTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCC                                                <  1:2112700‑M2/67‑1 (MQ=255)   tCACACCACCGCAGCGAATCTGTATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGC                                             >  1:5334394‑M2/1‑68 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCtgc                                              >  1:8671442‑M2/1‑64 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGC                                             >  1:27808373‑M2/1‑68 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGC                                             >  1:10260069‑M2/1‑68 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGC                                             >  1:2133532‑M2/1‑68 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGC                                             >  1:2093475‑M2/1‑68 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGC                                             >  1:19534943‑M2/1‑68 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGC                                             >  1:18352845‑M2/1‑68 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              >  1:6348179‑M2/1‑67 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              <  1:21210053‑M2/67‑1 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              <  1:16672859‑M2/67‑1 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              <  1:21673050‑M2/67‑1 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              >  1:22861330‑M2/1‑67 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              >  1:10882093‑M2/1‑67 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              <  1:34794‑M2/67‑1 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              >  1:24786271‑M2/1‑67 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              >  1:25753396‑M2/1‑67 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              >  1:26911866‑M2/1‑67 (MQ=255)   tCACACCACCGCAGCGAATCTGGATATCAGCATCCCGTATGGCACAGACCCGGCAGGTAACCGCCTG                                              <  1:23630628‑M2/67‑1 (MQ=255)   tCACACCACCGCAGCGAAGCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTG                                              >  1:866029‑M2/1‑67 (MQ=255)    cacaCCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCC                                            >  1:18748169‑M2/1‑68 (MQ=255)     acacCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCC                                            >  1:9764953‑M2/1‑67 (MQ=255)       accaccGCAGCGAATCTGGATATCCGCATCGCGTATGCCACAGACCCGGCTGGTAAACGACTGCCgg                                          <  1:24237720‑M2/67‑3 (MQ=255)                 cGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGC                                             <  1:17706749‑M2/54‑1 (MQ=255)                                           gCCACAGACCCGGCAGGTAACCGCCTGCCgggtctgtggcattcgggatgcggatatccagattc        <  1:8712506‑M2/65‑37 (MQ=255)                                            ccACAGACCCGGCAGGTAACCGCCTGCCgggtctgtggcttacgggatgcggatatccagattcgct     <  1:19838486‑M2/67‑40 (MQ=255)                                            ccACAGACCCGGCAGGTAACCGCCTGCCgggtctgtggcatacgggatgcggatatccagattcgct     <  1:8753565‑M2/67‑40 (MQ=255)                                            ccACAGACCCGGCAGGTAACCGCCTGCCgggtctgtggcatacgggatgcggagatccagattcgctg    <  1:17512533‑M2/68‑41 (MQ=255)                                              acaGACCCGGCAGGTAACCGCCTGCCggggctgtggcatacgggatgcggatatccagagtcgcggcg  <  1:29111813‑M2/68‑43 (MQ=255)                                                     |                                                             GTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCC  >  CP009273/3615213‑3615325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.