| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3669630 | NA (NA) | 13 (0.040) | 9/82 | NT | NA | noncoding (150/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | = 3669631 | NA (NA) | noncoding (151/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
Only 100 of 560 total aligned reads displayed.
CACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCC > CP009273/3669563‑3669697 | aCGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACATTCTAAATCTGTTTAATTGCCGGATGTCa > 1:21543784/1‑68 (MQ=255) aCGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTATATCTGTTTAATTGCAGGATGTCa > 1:22131092/1‑68 (MQ=255) aCGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCa > 1:17483601/1‑68 (MQ=255) aCGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCa > 1:8017317/1‑68 (MQ=255) gccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAga > 1:13281774‑M2/1‑66 (MQ=255) tCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccg < 1:9067663‑M2/68‑9 (MQ=255) tCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccg > 1:20709040‑M2/1‑60 (MQ=255) tCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccg > 1:11569520‑M2/1‑60 (MQ=255) tCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccg > 1:26071403‑M2/1‑60 (MQ=255) tCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccg < 1:11925825‑M2/68‑9 (MQ=255) gCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaa < 1:1219962‑M2/68‑13 (MQ=255) gCATGAACAAAGCACACTTTGCCAACAAACTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaa < 1:144625‑M2/68‑13 (MQ=255) cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaat < 1:28483991‑M2/68‑14 (MQ=255) cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaat < 1:28838094‑M2/68‑14 (MQ=255) cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaat < 1:28957752‑M2/68‑14 (MQ=255) tGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatta > 1:33377933‑M2/1‑53 (MQ=255) tGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatta > 1:30139551‑M2/1‑53 (MQ=255) gAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTat < 1:27987832/68‑1 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca > 1:30518719/1‑68 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca < 1:24553839/68‑1 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca > 1:12891106/1‑68 (MQ=255) cacaCTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:7748947/1‑67 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct < 1:32728308/66‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct < 1:15872394/66‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:2410973/1‑66 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:569912/1‑68 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:7242781/1‑68 (MQ=255) tttGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCa > 1:18666584/1‑68 (MQ=255) ccAACAATCTAAATCTGTTTAATTGCCGGATGTCtgacatccggcaattaaacagatttagattgttg > 1:14870876‑M1/1‑34 (MQ=255) ccAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCt > 1:18775397/1‑67 (MQ=255) ccAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCt > 1:16529180/1‑67 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:24277373/68‑1 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:7118997/68‑1 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:33680970/1‑68 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:15382141/68‑1 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:11340072/68‑1 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:20512745/68‑1 (MQ=255) aTCTAAATCTGTTTAATTGCCGGATGTCAGACATCAGGCAATTATCATCACGGCTTCATCTGCGACaa > 1:168901/1‑68 (MQ=37) aaTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTTCGACAAAATCg > 1:17955615/1‑68 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:31385907/68‑1 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:25519178/68‑1 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:8730607/68‑1 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:19331241/68‑1 (MQ=255) tCTGTTTAATTGCCGGATGTCGGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:14630606/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACTAATTCGt > 1:28184091/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:27198344/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:26730747/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:6503554/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:12477662/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:5033308/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:20409561/1‑67 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:3811483/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:22366800/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:8385011/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:433850/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:6765069/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:1503155/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATCATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:32056764/67‑1 (MQ=255) tAATTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttca > 1:24851616‑M1/1‑15 (MQ=255) aaTTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcat < 1:29986301‑M1/68‑55 (MQ=255) aaTTGCCGGATGTCCgacatccggccattaaacagattcagattgttggcaaagtgtgctttgttcat > 1:16279473‑M2/1‑15 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:19510187/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:1351050/68‑1 (MQ=255) aTTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcat > 1:10758138‑M1/1‑13 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:10242106/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:527269/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:31819494/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:273607/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg > 1:25112302/1‑68 (MQ=255) ttGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgc < 1:27062121‑M1/68‑57 (MQ=255) ttGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgc < 1:23027928‑M1/68‑57 (MQ=255) ttGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatg > 1:10050452‑M1/1‑12 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:28368283/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:7535813/68‑1 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAt > 1:29444896/1‑68 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAt < 1:11699924/68‑1 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAt < 1:34281626/68‑1 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAt > 1:4077416/1‑68 (MQ=255) gCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccg < 1:16141143‑M1/68‑59 (MQ=255) cGGATGTCtgacatccggcaattaaacagttttagattgttggcaaagtgtgctttgttcatgccgga < 1:8086669‑M1/68‑61 (MQ=255) cGGATGTCtgacatccggcaattaaacagatttagattgttggcaatgtgtgctttgttcatgccgga > 1:21075614‑M1/1‑8 (MQ=255) cGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccgga > 1:17728381‑M1/1‑8 (MQ=255) cGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccgga < 1:32524165‑M1/68‑61 (MQ=255) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAg < 1:14383749/68‑1 (MQ=255) ggATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGc < 1:23817206/68‑1 (MQ=255) aTGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccggatgc > 1:12341115‑M1/1‑5 (MQ=255) tGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccggatgcg < 1:9594652‑M1/68‑65 (MQ=255) tGTCtgacatcaggcaattaaacagatttagattgttggcaaagtgttctttgttcatgccggatgcg < 1:31022947‑M1/68‑65 (MQ=255) tGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCt > 1:1109495/1‑67 (MQ=255) tGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCt < 1:31542445/67‑1 (MQ=255) gTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccggatgcgg < 1:6303259‑M1/68‑66 (MQ=255) gTCAGACATGCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcc < 1:32289455/68‑1 (MQ=255) gTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcc < 1:17194215/68‑1 (MQ=255) gTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcc < 1:4731844/68‑1 (MQ=255) ctgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccggatgcggcg < 1:21380528‑M1/68‑68 (MQ=255) cAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcccc < 1:19840482/68‑1 (MQ=255) cAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcccc < 1:2186205/68‑1 (MQ=255) cAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcccc < 1:23292175/68‑1 (MQ=255) cAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcccc < 1:33214647/68‑1 (MQ=255) cAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTccc < 1:14075558/67‑1 (MQ=255) | CACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCC > CP009273/3669563‑3669697 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |