| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3669630 | NA (NA) | 13 (0.040) | 9/82 | NT | NA | noncoding (150/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | = 3669631 | NA (NA) | noncoding (151/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
Only 100 of 473 total aligned reads displayed.
ACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCT > CP009273/3669564‑3669698 | aCGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCa > 1:1427319/1‑68 (MQ=255) gccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAga > 1:30651538‑M2/1‑66 (MQ=255) ccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgac < 1:16821983‑M2/68‑4 (MQ=255) ccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgac < 1:8601932‑M2/68‑4 (MQ=255) tCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccg < 1:27622586‑M2/68‑9 (MQ=255) tCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccg < 1:13586873‑M2/68‑9 (MQ=255) tCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccg < 1:19780123‑M2/68‑9 (MQ=255) cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacctccggcaat < 1:15879733‑M2/68‑14 (MQ=255) cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaat < 1:3379278‑M2/68‑14 (MQ=255) cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaa > 1:10050452‑M2/1‑55 (MQ=255) aTGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatt < 1:29986301‑M2/68‑15 (MQ=255) tGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatta > 1:32655099‑M2/1‑53 (MQ=255) gAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTat < 1:25371037/68‑1 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca > 1:20368229/1‑68 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca < 1:24553839/68‑1 (MQ=255) cAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca > 1:26214203/1‑67 (MQ=255) aaaGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatcatc < 1:6270545/68‑1 (MQ=255) aaGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGAAGTCAgacatccggcaattaaacaga > 1:22018331‑M2/1‑47 (MQ=255) aaGCACACTTAGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTAtcatca < 1:6435305/68‑1 (MQ=255) gCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:32942902/1‑68 (MQ=255) gCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:11766442/1‑68 (MQ=255) gCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:8956082/1‑68 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:21106891/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:18776567/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:15397481/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:31578845/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:23267536/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct < 1:21664667/66‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct < 1:1854304/66‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct < 1:28384341/66‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:31446330/1‑66 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:12515218/1‑66 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:9542817/1‑66 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGGCAGACATCCGGCAATTATCATCActt < 1:30311019/67‑1 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:17802786/1‑68 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:28089795/1‑68 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct < 1:33504398/68‑1 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct < 1:6990987/68‑1 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:7242781/1‑68 (MQ=255) cTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACttcttc > 1:25056377/1‑68 (MQ=255) cTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACttcttc > 1:16228977/1‑68 (MQ=255) cTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACttcttc > 1:12953927/1‑68 (MQ=255) cTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGAAATTATCATCACttcttc > 1:7709351/1‑68 (MQ=255) ttCCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaattaaacagatttagattg > 1:15081233‑M2/1‑38 (MQ=255) gCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaattaaacagatttagattgtt > 1:8073921‑M2/1‑36 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:20512745/68‑1 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:24277373/68‑1 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:1136540/68‑1 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:6720066/68‑1 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:21487752/1‑68 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:32104026/1‑68 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:17075494/1‑68 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATATCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:27164207/1‑68 (MQ=255) aaTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCg > 1:10769070/1‑68 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCg > 1:25717440/1‑67 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:29032709/68‑1 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:14932958/68‑1 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:17597136/68‑1 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:12350718/68‑1 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:19331241/68‑1 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:2376207/68‑1 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:4281163/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:14491518/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:31173613/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:11189581/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:10480357/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:28865781/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:28636132/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:29478570/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:22644877/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:1867826/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:24696527/1‑67 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:5669108/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:5233917/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:32317285/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac > 1:1332407/1‑67 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:26845694/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:349288/67‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:11945681/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:5018378/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:19510187/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:14684141/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:3815017/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:31819494/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:12253575/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:11573492/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:7535813/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:22299845/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:2088159/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:4120646/68‑1 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCTTCTGCGACAAAATCGTCCGACACTGAt > 1:24017914/1‑68 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAt > 1:17356745/1‑68 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAt > 1:28268722/1‑68 (MQ=255) gCCGGATGTCAGACATCCGGCAATTATCATCTCTGCTTCATCTGCGAGATAATCGTCCGACTCTGAtt > 1:7924585/1‑68 (MQ=37) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAg < 1:14383749/68‑1 (MQ=255) ggATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGc < 1:33225575/68‑1 (MQ=255) gTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcc < 1:27237912/68‑1 (MQ=255) cAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTccc < 1:464698/67‑1 (MQ=255) cAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTccc < 1:8321873/67‑1 (MQ=255) cAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTccc < 1:16375047/67‑1 (MQ=255) | ACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCT > CP009273/3669564‑3669698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |