| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3734448 | NA (NA) | 4 (0.010) | 3/92 | NT | NA | intergenic (+130/+21) | avtA/ysaA | valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| ? | CP009273 | = 3734452 | NA (NA) | intergenic (+134/+17) | avtA/ysaA | valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
Only 100 of 456 total aligned reads displayed.
AGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACA > CP009273/3734381‑3734514 | agaaTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTT < 1:10667795‑M1/68‑1 (MQ=255)agaaTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTT > 1:7338150‑M1/1‑68 (MQ=255) atggatgttgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttTTCCGGCGtt < 1:26058444‑M1/10‑1 (MQ=255) atggatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttTTCCGGCGtt > 1:24414353‑M1/58‑67 (MQ=255) atggatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttTTCCGGCGtt < 1:28320891‑M1/10‑1 (MQ=255) atggatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttTTCCGGCGtt < 1:39891‑M1/10‑1 (MQ=255) atggatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttTTCCGGCGtt < 1:15787293‑M1/10‑1 (MQ=255) atggatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttTTCCGGCGtt < 1:8367600‑M1/10‑1 (MQ=255) atggatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttTTCCGGCGtt < 1:6824352‑M1/10‑1 (MQ=255) atggatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttTTCCGGCGtt < 1:22264621‑M1/10‑1 (MQ=255) atggatgtcgagaaagtgcagcggcatcggctacggcagcagcctgtttgaaacgttTTCAGGCGtt < 1:6280229‑M1/10‑1 (MQ=255) aTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTgag > 1:19086037/1‑68 (MQ=255) aGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacg > 1:10971435‑M2/1‑63 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacgccgg < 1:19618442‑M2/68‑9 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacgcc > 1:7880181‑M2/1‑60 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:12959264/68‑1 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:26403972/68‑1 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:33928126/68‑1 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:25694086/68‑1 (MQ=255) aGGCGGTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:25876339/68‑1 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:7062301/1‑67 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:27622976/1‑67 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTtgtgaacgcgggaccagtgcgg > 1:17959241‑M1/1‑46 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAACCGCCGGATAACGTTTc > 1:12399258/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:2678399/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:27226868/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:32485330/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:16250217/1‑68 (MQ=255) gTTTATGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCa < 1:27900247/68‑1 (MQ=255) gTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCa < 1:18241550/68‑1 (MQ=255) tttACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCaa > 1:18372167/1‑68 (MQ=255) ttACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAATGTTTCaaa < 1:12868489/68‑1 (MQ=255) aCGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACa > 1:2273456/1‑68 (MQ=255) aCGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTAGAGAAACGCCGGATAACGTTTCAAACa > 1:15148100/1‑68 (MQ=255) cgccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAg > 1:23894450/1‑68 (MQ=255) cgccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAg > 1:21866436/1‑68 (MQ=255) cgccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAg > 1:30406308/1‑68 (MQ=255) gccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAgg < 1:1611548/68‑1 (MQ=255) gccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAgg < 1:252500/68‑1 (MQ=255) cgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct < 1:5794714/68‑1 (MQ=255) cgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct < 1:883361/68‑1 (MQ=255) cgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct < 1:18531782/68‑1 (MQ=255) aTCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct > 1:29190376/1‑65 (MQ=255) aTCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct > 1:29626471/1‑65 (MQ=255) aTCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct > 1:31677474/1‑65 (MQ=255) tCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGctgctg < 1:10507404/68‑1 (MQ=255) tCTGGCATAAACAAAGCGCACTG‑TCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:24551517/68‑1 (MQ=255) gcagcagcctgtttgaaacgttTTCCGGCGTTGAGAAACGCCGGGAAACGTTTCAAACCGGctgctg < 1:10276916‑M1/45‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:7669474/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:24857189/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:14397157/68‑1 (MQ=255) cATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGt < 1:23196664/67‑1 (MQ=255) aTAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAg < 1:16969653/68‑1 (MQ=255) tAAACACAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGc < 1:5442940/68‑1 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:121720/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:5051387/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:31845112/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:21117169/1‑68 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:9370340/68‑1 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:16753830/68‑1 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:20419210/68‑1 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:1315345/68‑1 (MQ=255) gcgcACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc > 1:31237359/1‑67 (MQ=255) gcACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCt < 1:6538952/68‑1 (MQ=255) aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGc < 1:7421534/68‑1 (MQ=255) aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGc < 1:29796290/68‑1 (MQ=255) aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGc < 1:819913/68‑1 (MQ=255) gaTCCGGCGTTGAGAAACCCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACt < 1:1924511‑M1/66‑1 (MQ=255) gTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACt < 1:13377000/68‑1 (MQ=255) gTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACt > 1:6151782/1‑68 (MQ=255) TCCGGCGTTGAGAAACGCTCGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACttt > 1:14830169‑M1/1‑68 (MQ=255) TCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACtt > 1:22468977‑M1/1‑67 (MQ=255) ccGGCGTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccgg < 1:12692097‑M1/68‑61 (MQ=255) cGGCGTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggc < 1:33507910‑M1/68‑62 (MQ=255) cGGCGTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggc < 1:362830‑M1/68‑62 (MQ=255) cGGCGTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggc < 1:24209328‑M1/68‑62 (MQ=255) cGGCGTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggc < 1:2016717‑M1/68‑62 (MQ=255) cGGCGTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggc < 1:10012250‑M1/68‑62 (MQ=255) CGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:23571248‑M1/1‑68 (MQ=255) CGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:32983134‑M1/1‑68 (MQ=255) CGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:20688450‑M1/1‑68 (MQ=255) ggCGTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccgg > 1:19425453‑M1/1‑6 (MQ=255) GGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtctc < 1:13995281‑M1/68‑1 (MQ=255) GGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtctc < 1:28848877‑M1/68‑1 (MQ=255) GGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtctc < 1:18679670‑M1/68‑1 (MQ=255) cGTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcct < 1:20043692‑M1/67‑64 (MQ=255) cGTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcct > 1:20970224‑M1/1‑4 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:30853274‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:32137664‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:2856602‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:4468137‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:437583‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:27984474‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:3828293‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:11720863‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:1729549‑M1/67‑1 (MQ=255) gTTtctcaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctac > 1:17801088‑M1/1‑3 (MQ=255) GTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGAc > 1:9119550‑M1/1‑68 (MQ=255) TGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACa > 1:21428615‑M1/1‑67 (MQ=255) TGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACa > 1:34468677‑M1/1‑67 (MQ=255) | AGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACA > CP009273/3734381‑3734514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |