| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3734448 | NA (NA) | 4 (0.010) | 3/92 | NT | NA | intergenic (+130/+21) | avtA/ysaA | valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| ? | CP009273 | = 3734452 | NA (NA) | intergenic (+134/+17) | avtA/ysaA | valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
Only 100 of 444 total aligned reads displayed.
TTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCA > CP009273/3734385‑3734518 | gTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaac > 1:17801088‑M2/1‑65 (MQ=255) aGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacg < 1:10879809‑M2/67‑5 (MQ=255) aGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacg > 1:30508148‑M2/1‑63 (MQ=255) aGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacg > 1:2607474‑M2/1‑63 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacgccg < 1:10012250‑M2/68‑8 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacgccg < 1:12745112‑M2/68‑8 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacgccg < 1:28290757‑M2/68‑8 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacgccg < 1:16324604‑M2/68‑8 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacgccg < 1:4457674‑M2/68‑8 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAaacgcc > 1:8344364‑M2/1‑60 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTTAGAAACGCCGGAAAACGt < 1:13600682/68‑1 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:23855569/68‑1 (MQ=255) aGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt < 1:19557596/68‑1 (MQ=255) ggCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:18008440/1‑68 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTTAGAAACGCCGGAAAACGttt > 1:11210802/1‑68 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:7062301/1‑67 (MQ=255) gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGtt > 1:25611764/1‑67 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:18684795/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:2678399/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:351764/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:1861860/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:26457194/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:33501431/1‑68 (MQ=255) cGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTc > 1:12895348/1‑68 (MQ=255) aCGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAATACGTTTCAAACa > 1:7400960/1‑68 (MQ=255) aCGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACa > 1:2273456/1‑68 (MQ=255) cgccgcATCTGGCATAAACAAAGCGCCCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCACACAg > 1:1256316/1‑68 (MQ=255) gccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAgg < 1:16212258/68‑1 (MQ=255) gccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAgg < 1:252500/68‑1 (MQ=255) gccgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAg > 1:13179626/1‑67 (MQ=255) cgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct < 1:5041216/68‑1 (MQ=255) cgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct < 1:7583822/68‑1 (MQ=255) cgcATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct < 1:883361/68‑1 (MQ=255) aTCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgct > 1:29190376/1‑65 (MQ=255) tCTGGCATAAACAAAGCGCACTG‑TCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:24551517/68‑1 (MQ=255) gcagcagcctgtttgaaacgttTTCCGGCGTTGAGAAACGCCGGGAAACGTTTCAAACCGGctgctg < 1:10276916‑M1/45‑1 (MQ=255) cTGGCATAAACAATGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAATCGTTTCAAACAGGCtgctgc < 1:10506067/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:33021316/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:8063363/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:25993636/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:24857189/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:1713529/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:21827534/68‑1 (MQ=255) cTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:14397157/68‑1 (MQ=255) cTGGCATAAACAAACCGCACTGTTCCTGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc < 1:21169460/68‑1 (MQ=255) tGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGcc < 1:6139301/68‑1 (MQ=255) cATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGt < 1:23196664/67‑1 (MQ=255) cATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGt < 1:20110404/67‑1 (MQ=255) cATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGt < 1:20804411/67‑1 (MQ=255) aTAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAg < 1:29523486/68‑1 (MQ=255) aTAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAg < 1:15911946/68‑1 (MQ=255) aTAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAg < 1:29701954/68‑1 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:22280213/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:31845112/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa > 1:121730/1‑68 (MQ=255) aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCCTAGCCGa > 1:9160641/1‑68 (MQ=255) aGCGCACTGTTCCGGCTTTGAGACACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:7715970/68‑1 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:3252684/68‑1 (MQ=255) aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc < 1:18375605/68‑1 (MQ=255) gcgcACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc > 1:21048954/1‑67 (MQ=255) gcACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGcc > 1:31658921/1‑65 (MQ=255) gcACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCt < 1:6538952/68‑1 (MQ=255) aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGc < 1:20482417/68‑1 (MQ=255) aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGc < 1:11913991/68‑1 (MQ=255) aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGc < 1:32105140/68‑1 (MQ=255) aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGc < 1:4884554/68‑1 (MQ=255) tGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCAc < 1:34299368/68‑1 (MQ=255) gaTCCGGCGTTGAGAAACCCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACt < 1:1924511‑M1/66‑1 (MQ=255) TCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACttt > 1:18999165‑M1/1‑68 (MQ=255) CGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:24075028‑M1/1‑68 (MQ=255) CGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:3762671‑M1/1‑68 (MQ=255) CGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:6304492‑M1/1‑68 (MQ=255) CGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtct > 1:27933825‑M1/1‑68 (MQ=255) GGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtctc < 1:28848877‑M1/68‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCAGTTTCTCg < 1:16840668‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:3876535‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:5246771‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:13089405‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:6788242‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:33899079‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:14503160‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:30853274‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:1729549‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:2725578‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:1827633‑M1/67‑1 (MQ=255) CGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg < 1:2856602‑M1/67‑1 (MQ=255) GTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGAc > 1:22429499‑M1/1‑68 (MQ=255) TGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACa > 1:27800026‑M1/1‑67 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGTAGTTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:15011014/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:5485241/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:15474691/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:32281141/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:31138302/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:30306230/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:13705010/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:24263211/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:22022017/68‑1 (MQ=255) gagaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:9393030/68‑1 (MQ=255) agaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc < 1:23475891/67‑1 (MQ=255) gaAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCa > 1:19734016/1‑68 (MQ=255) | TTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCA > CP009273/3734385‑3734518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |