| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 725766 = | NA (NA) | 3 (0.010) | 3/104 | NT | NA | coding (728/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 725788 = | NA (NA) | coding (750/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
Only 100 of 137 total aligned reads displayed.
GTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGC > CP009273/725721‑725853 | gTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGAcc > 1:31724493/1‑68 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACTGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:21639874/67‑1 (MQ=255) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:10426546/67‑1 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:7138463/67‑1 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:6274309/67‑1 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:6142231/67‑1 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:32987688/67‑1 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:25753836/67‑1 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:22704266/67‑1 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:17048463/67‑1 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACg < 1:14186125/67‑1 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGc > 1:28950728/1‑68 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGc > 1:23879479/1‑68 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGc > 1:33822888/1‑68 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGc > 1:19875267/1‑68 (MQ=35) aTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGc > 1:3505729/1‑68 (MQ=35) ttCAGCGGCGAAATCCCCGGCGTGACGGATGGTGCCGGGCGTCACTGCCGGCTGGGACTGACCACGCa < 1:3991236/68‑1 (MQ=11) tCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAg > 1:29723157/1‑68 (MQ=35) tCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAg > 1:28220186/1‑68 (MQ=35) tCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAg > 1:34000341/1‑68 (MQ=35) tCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAg > 1:5628828/1‑68 (MQ=35) tCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAg > 1:14058071/1‑68 (MQ=35) tCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCCTCACTTCCGGCTGGTACTGACCACGCAg > 1:27773447/1‑68 (MQ=25) cAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAgg < 1:433435/68‑1 (MQ=35) cAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAgg < 1:23275096/68‑1 (MQ=35) cAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAgg < 1:16769592/68‑1 (MQ=35) cAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAgg < 1:34237110/68‑1 (MQ=35) cAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAgg < 1:21527203/68‑1 (MQ=35) gcggcgAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGgc > 1:26194396/1‑67 (MQ=35) gcggcgAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGgc > 1:29544836/1‑67 (MQ=35) gcggcgAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGgc > 1:31289485/1‑67 (MQ=35) gcggcgAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGgc > 1:33864862/1‑67 (MQ=35) ggcgAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGgcgc < 1:5039802/67‑1 (MQ=35) ggcgAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCa > 1:25631965/1‑68 (MQ=35) ggcgAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCa > 1:21180634/1‑68 (MQ=35) ggcgAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCa < 1:20719905/68‑1 (MQ=35) gAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGc < 1:11115150/67‑1 (MQ=35) aaccACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCggg < 1:30892999/65‑1 (MQ=25) aaTCCCCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCggg < 1:2769531/68‑1 (MQ=25) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCGGGCTGGTACTGACCACGCAGGCGCAGCgg < 1:24430502/67‑1 (MQ=255) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCggg < 1:29316502/68‑1 (MQ=35) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCggg < 1:29530514/68‑1 (MQ=35) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCggg < 1:1691180/68‑1 (MQ=35) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCggg < 1:3605103/68‑1 (MQ=35) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCggg < 1:3645570/68‑1 (MQ=35) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCgg < 1:29808734/67‑1 (MQ=35) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCgg < 1:23994548/67‑1 (MQ=35) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCgg < 1:24032163/67‑1 (MQ=35) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCgg < 1:3469082/67‑1 (MQ=35) aaTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCgg < 1:10742516/67‑1 (MQ=35) aaTCACCGGCGTGACGGAGGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCggg < 1:30899431/68‑1 (MQ=25) tCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCa > 1:31505707/1‑68 (MQ=35) aCCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCaga < 1:19207415/68‑1 (MQ=35) aCCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCaga < 1:25748208/68‑1 (MQ=35) aCCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCaga < 1:10672771/68‑1 (MQ=35) aCCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCaga > 1:7186698/1‑68 (MQ=35) aCCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCaga < 1:15725604/68‑1 (MQ=35) aCCGGCGTGACGGAGGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCaga < 1:22142257/68‑1 (MQ=25) ccGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCagaa > 1:25690524/1‑68 (MQ=35) ccGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCagaa > 1:19468989/1‑68 (MQ=35) ccGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCagaa > 1:25592521/1‑68 (MQ=35) ggCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCagaaga > 1:33336297/1‑68 (MQ=35) ggCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCagaaga > 1:32953445/1‑68 (MQ=35) ggCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCagaaga > 1:8700656/1‑68 (MQ=35) ggCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCagaaga > 1:19133344/1‑68 (MQ=35) ggCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCagaaga > 1:20026772/1‑68 (MQ=35) ggCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCagaaga > 1:18017338/1‑68 (MQ=35) gCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAgaagaa < 1:20569079/68‑1 (MQ=35) gCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAgaagaa > 1:22396899/1‑68 (MQ=35) cgggACGGATGGGGCCGGGCGGCACTTCCGGCGGGTACTGCCCACGCAGGCGCAGCGGGCAgaagaa < 1:28467158/64‑1 (MQ=11) cGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAgaagaa > 1:29547695/1‑67 (MQ=35) cGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAgaagaa < 1:17244404/67‑1 (MQ=35) cGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAgaagaa > 1:11233100/1‑67 (MQ=35) gggACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGc < 1:7725295/66‑1 (MQ=25) gTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGc < 1:23377159/68‑1 (MQ=35) gTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGc < 1:11464698/68‑1 (MQ=35) gTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGc < 1:11559856/68‑1 (MQ=35) gTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGc < 1:7399517/68‑1 (MQ=35) cGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGG < 1:18857854‑M1/68‑1 (MQ=255) cGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCG > 1:4271084‑M1/1‑67 (MQ=255) cGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCG > 1:14494694‑M1/1‑67 (MQ=255) cGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCG > 1:13770503‑M1/1‑67 (MQ=255) cGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCG > 1:28952962‑M1/1‑67 (MQ=255) ggATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGC > 1:16063460‑M1/1‑68 (MQ=255) ggATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGC > 1:3103081‑M1/1‑68 (MQ=255) ggATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGC < 1:24463109‑M1/68‑1 (MQ=255) ggATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGC > 1:32530451‑M1/1‑68 (MQ=255) aTGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCA > 1:19235071‑M1/1‑67 (MQ=255) aTGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCA > 1:6332059‑M1/1‑67 (MQ=255) aTGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCA < 1:647617‑M1/67‑1 (MQ=255) tGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAcc < 1:17445856‑M1/68‑3 (MQ=255) tGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAcc < 1:32206078‑M1/68‑3 (MQ=255) ggTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGgcagca > 1:1471337/1‑68 (MQ=35) ggTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGgcagca > 1:10059823/1‑68 (MQ=35) ggTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGgcagca > 1:28052381/1‑68 (MQ=35) ggTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGgcagca > 1:10958961/1‑68 (MQ=35) gCGTCACTTCCGGCTGGTACTGACCCCGCAGGCGCAGCGGGCAGAAGCAGCCCGGCAccatccgtcac > 1:5953528‑M1/1‑57 (MQ=255) gCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAccatccgtcac > 1:21314144‑M1/1‑57 (MQ=255) cTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAccatccgtcacgccggt > 1:4990319‑M1/1‑51 (MQ=255) ccACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAccatccgtcacgccggtgatttcgccgctgaat > 1:12919088‑M1/1‑34 (MQ=255) | GTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGC > CP009273/725721‑725853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |