| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701734 = | NA (NA) | 13 (0.040) | 7/96 | NT | 8.9% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 155 (0.370) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 428 total aligned reads displayed.
CACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTG > CP009273/3701675‑3701809 | aaagcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg < 1:31383078‑M2/1‑1 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:23150234/1‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:25533747/1‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:1198370/1‑68 (MQ=255) caTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGa < 1:7914688/68‑1 (MQ=255) agcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGa > 1:10732738‑M2/66‑68 (MQ=255) gcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAg > 1:5571622‑M2/65‑68 (MQ=255) tttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAgg < 1:29011505/68‑1 (MQ=255) tttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAgg < 1:15214432/68‑1 (MQ=255) cctgctcaaagagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg > 1:8550608‑M2/64‑68 (MQ=255) ttGCCTGATGCGACGGTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:7368078/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:31642310/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:16371127/68‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:22004525‑M2/5‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:32074459‑M2/5‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:17687413‑M2/5‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAg < 1:26139815‑M2/4‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGt < 1:2283568‑M2/6‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGt < 1:30900174‑M2/6‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGt < 1:4511520‑M2/6‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGt < 1:12856043‑M2/6‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 1:13550305/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 1:28131610/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:3477476/1‑67 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:5243603/1‑67 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:17099508/1‑67 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:27145925/1‑67 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtc > 1:1618876/1‑67 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtc > 1:31178923/1‑67 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:16793394/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:24740906/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:8458302/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:10521796/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCGCCCTGCCCCCGGAGGTtctc > 1:25884415/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAAACTCCCTGCCCCCGGAGGTtctc > 1:23542436/1‑68 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:5949883/68‑1 (MQ=255) gATGCGACGCTGACGCGTCGTATCAGGCCTCCGTCGAGTCGACACTCCCTGCCCCCGGGGGTTCGCa > 1:20651165/1‑67 (MQ=21) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt > 1:21603058/1‑66 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt > 1:8196464/1‑66 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATcc < 1:265473/68‑1 (MQ=255) gagcaggcttttttgcatctgcagctcatgaggatgagaaccgccgggggcagGGAGGTTCTCATCCt < 1:20466977‑M2/15‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:9761978/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:3843085/68‑1 (MQ=255) gACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCa < 1:21378455/68‑1 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGa < 1:7677188/68‑1 (MQ=255) tGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGc < 1:17935477/68‑1 (MQ=255) gACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCGCCCGGAGGTTCTCATCCTCATGAGCt < 1:12581771/68‑1 (MQ=255) gACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCt < 1:8811620/68‑1 (MQ=255) ttttgcatctgcagcgcatgaggatgagaacctccgggggcagGGAGGTTCTCATCGTCATGAGCTGc < 1:33930897‑M2/25‑1 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc > 1:23790353/1‑68 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc > 1:12143087/1‑68 (MQ=255) cgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAg > 1:21059764/1‑68 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt < 1:19152125/67‑1 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt > 1:30102301/1‑67 (MQ=255) tATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCa < 1:5728881/68‑1 (MQ=255) tATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCa > 1:10072400/1‑68 (MQ=255) tATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCa < 1:4286202/68‑1 (MQ=255) tATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCa < 1:3309326/68‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:27866074/68‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:18148012/68‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:938979/68‑1 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:28612774‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:21745617‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:30568677‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:24515596‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:32334437‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAGCCTCATGAGCTGCAGATGCAAA > 1:15599971‑M1/1‑68 (MQ=255) aGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:1589820‑M1/1‑68 (MQ=255) aGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:8956708‑M1/1‑68 (MQ=255) gCCTACGTCGCGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGCTGCAAAAAA > 1:18514327‑M1/1‑67 (MQ=255) gCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:19556232‑M1/1‑67 (MQ=255) gCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGATCTCATACTAATGAGAAGCAGATGCAAAAAA > 1:21873220‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCTGATGCAAAAAAG > 1:32654393‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:27348853‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:24061193‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:24164374‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:21289968‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:11248025‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:26685808‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:14870025‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGCTGCAAAAAAGCCTGC > 1:33641346‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGg > 1:32261012‑M1/1‑66 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:14492313‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:22371973‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:33327871‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:18972529‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:26895524‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:13902033‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:20820649‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:29708158‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:6259734‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:15340077‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:28442985‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:2918033‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATACAAAAAAGCCTGC > 1:4888362‑M1/1‑67 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:6662390‑M1/1‑68 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:3252170‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCT < 1:34405187‑M1/67‑1 (MQ=255) cgagtctaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:19882068‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:30250814‑M1/67‑1 (MQ=255) | CACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTG > CP009273/3701675‑3701809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |