| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3851553 = | 472 (1.140) | 38 (0.120) | 11/86 | NT | 10.9% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 259 (0.810) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
Only 100 of 712 total aligned reads displayed.
CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA > CP009273/3851537‑3851669 | gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:20974581/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:7366891/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:17930046/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:13492964/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAg > 1:27886764/1‑67 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg < 1:10472449‑M2/4‑1 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg < 1:32561072‑M2/4‑1 (MQ=255) ttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAGGCGt < 1:6652502‑M2/7‑1 (MQ=255) tgttgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACa < 1:10734571/67‑1 (MQ=255) gttgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa < 1:21483143/68‑1 (MQ=255) gttgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa < 1:6125243/68‑1 (MQ=255) acgcctgCACGGGCCGGCCTGGTTAGCGTAGATACCGGTTAATAGTCCGGCCCGTGCAGGCGTACaa < 1:20044925‑M1/60‑1 (MQ=255) acgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaa < 1:31254611‑M1/60‑1 (MQ=255) cgcctgCACGGGCCGGACTGGTTAGGGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa < 1:8835814‑M1/61‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc > 1:27082619/1‑68 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc < 1:27425161/68‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc > 1:8137271/1‑68 (MQ=255) cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGGAGGCGTACAAACCg < 1:5917749‑M1/64‑1 (MQ=255) cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg < 1:34498449‑M1/64‑1 (MQ=255) cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg < 1:33477645‑M1/64‑1 (MQ=255) cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg < 1:16838098‑M1/64‑1 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:15933725/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:20782231/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCCGt > 1:5402042/1‑68 (MQ=255) ccacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTg > 1:4734939‑M2/51‑68 (MQ=255) CACGGGCCGGACTGGTTAGCGTAGATACGGGTAAATAGTCCGGCGCGTGCAGGCGTACAAACCGGTGa > 1:28226932‑M1/1‑68 (MQ=255) CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa < 1:10980238‑M1/68‑1 (MQ=255) CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa < 1:28708456‑M1/68‑1 (MQ=255) ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGaa > 1:1384283‑M1/1‑68 (MQ=255) ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa < 1:15245979‑M1/67‑1 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTTCAAACCGGTGAACa < 1:26581602‑M1/68‑1 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACa < 1:20365381‑M1/68‑1 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGAAGGCGTACAAACCGGTGAACa < 1:14452095‑M1/68‑1 (MQ=255) GGCCGGCCTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCACGCGTACAAACCGGTGaaccg < 1:4262826‑M1/68‑3 (MQ=255) GCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg > 1:11189800‑M1/1‑67 (MQ=255) GCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg > 1:18330960‑M1/1‑67 (MQ=255) gcGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACATACCGGTGAACAgg < 1:17440525/66‑1 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:2569370‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt < 1:25396436‑M1/68‑1 (MQ=255) cggactatttaccggtatcaacgctacccaccccggcccgcgCAGGCGTACAAACCGGTGAACAGgt < 1:317540‑M2/25‑1 (MQ=255) CGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt > 1:9612867‑M1/1‑67 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:23821516‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:3970425‑M1/68‑1 (MQ=255) ctatttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAgg < 1:16286979‑M2/30‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg > 1:30491564‑M1/1‑67 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:7544501‑M1/67‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:26137148‑M1/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:27290109/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:31017871/67‑1 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:25844153/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:29840162/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:18498053/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:212726/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:9059731/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:10027207/1‑68 (MQ=255) tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaaa > 1:24793218/1‑68 (MQ=255) aGATACCTGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:12425771/68‑1 (MQ=255) aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:2247551/68‑1 (MQ=255) aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:4477137/68‑1 (MQ=255) aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:5688711/68‑1 (MQ=255) aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:30715552/68‑1 (MQ=255) aTACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCg > 1:32331066/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAGCAGGTGTAGGCGGAATTAAAGCGa > 1:17156316/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:29536811/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:12997084/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:508376/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:13327326/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:14154031/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:33825315/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:15675842/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:19488055/1‑68 (MQ=255) aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACATACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa > 1:11405782/1‑68 (MQ=255) aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa > 1:3711144/1‑68 (MQ=255) ccGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAAt > 1:6252332/1‑68 (MQ=255) ccGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAAt > 1:15075609/1‑68 (MQ=255) ccGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAAt > 1:23176051/1‑68 (MQ=255) ggTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATAc < 1:11571488/68‑1 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:21676317/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:7920422/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:30236892/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:9298913/1‑68 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:8547289‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:31442724‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCATccg > 1:7028975‑M2/14‑67 (MQ=255) gtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc > 1:14777987‑M2/13‑68 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc < 1:29222545‑M2/56‑1 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc < 1:11898895‑M2/56‑1 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:19754049‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:2440344‑M2/7‑67 (MQ=255) ccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGa < 1:15485678‑M2/62‑1 (MQ=255) ccgtgCAGGCGTACAAACCGGTGAACAGGGGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGAc < 1:26864887‑M2/63‑1 (MQ=255) cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt < 1:25155354‑M2/64‑1 (MQ=255) cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt < 1:24190641‑M2/64‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:12826391‑M2/65‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:17679400‑M2/65‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:10279571‑M2/65‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:33922378‑M2/65‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:33229927‑M2/65‑1 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:18950293‑M2/67‑1 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:21924742‑M2/67‑1 (MQ=255) | CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA > CP009273/3851537‑3851669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |