| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4535241 = | 530 (1.380) | 8 (0.020) | 5/94 | NT | 1.8% | coding (329/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | CP009273 | 4535424 = | 429 (1.330) | coding (512/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 111 total aligned reads displayed.
AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4535315‑4535241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG > CP009273/4535424‑4535489 AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:5158440/1‑68AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:268754/1‑68AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:26252791/1‑68AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:5124297/1‑68 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:15855227/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:27241306/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:16406274/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:30005887/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:12725746/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:1312957/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:30124834/1‑67 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGC > 1:10305901/1‑67 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC < 1:16024600/65‑1 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC < 1:30214252/65‑1 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:4461349/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:20124161/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:30919493/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:9730665/1‑68 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCc < 1:22183125/68‑2 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:21947520/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:20876557/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:31380166/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:7982918/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:13326048/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:28520503/68‑1 CATCCGCCAGCAGATTCATACCTGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:21675622/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCTTATTCAGCCCCCTACTGGCGAGATGCGCGCGT < 1:7634475/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCTCATACTGGCGTGTTGCGCGCGT > 1:21215673/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:22978803/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:23435684/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:31001658/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:30190438/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT > 1:22692749/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:22421330/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:22351024/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:27414620/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:27905020/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:31427723/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:9140903/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:143865/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT > 1:14506336/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:15090257/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:16697079/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT > 1:19365871/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:20509979/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT > 1:21075839/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:18042502/68‑1 CATCCGCCAGCAGAATCATACCGGCGACCGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:8007044/68‑1 ATCCGCCAGCAGATTCATTCCGGCGACATTAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:10906276/68‑1 ATCCGCCAGCAGATTCATACCGGCGACATAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:31889561/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:8660799/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:11018549/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:27163973/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:31066783/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:6209463/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:6209447/68‑1 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:29486957/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:9006291/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:27934985/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:5733731/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:10533671/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:27339677/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:26990552/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:15455175/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:15780679/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:12449443/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:22969841/1‑67 CCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGT < 1:27548306/68‑1 CAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATA < 1:24069251/68‑1 CAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTAT < 1:21995525/67‑1 TTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATATTCCT < 1:7606443/66‑1 TTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATATTCC < 1:14315218/65‑1 TTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATATTCC < 1:8951478/65‑1 cTACCCGCGACAGACGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATATTCCTCCTGA < 1:29318686/67‑1 ACCGGCGACATATGCCGTTTTCAGCCCGATACTGGCGAGTTGCGCGCGTGGTTATATTCCTCCTGAGT < 1:21502448/68‑1 ACCGGCGACAGACGCCGTATTCAGCCCCATACTGCCGAGTTGCGCGCGTGGTTATATTCCTCCTGAGT < 1:14338986/68‑1 cgtGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:18753143/4‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTTTAATT > 1:5586475/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:4526986/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:11589658/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:15181947/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:5257534/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:31358245/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:24613003/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:24530658/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAAT > 1:562176/1‑67 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTAAATTATAATT > 1:2048997/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTAAATTATAATT > 1:25093454/1‑68 CGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTC > 1:12402701/1‑68 CGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCA > 1:26463916/1‑67 GTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAG < 1:16046131/67‑1 GTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAG < 1:6834082/67‑1 GTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAG < 1:12070449/67‑1 TGGTTATATTCCTCATGATTTTTGGGATCCCGGTTTTTATGCCTGATTGCTCAATTATAATTTCAGCG < 1:11031937/68‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:17485486/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:206178/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:30317762/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:2544632/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:29014467/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:27929149/67‑1 AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4535315‑4535241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG > CP009273/4535424‑4535489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |