| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4535241 = | 530 (1.380) | 8 (0.020) | 5/94 | NT | 1.8% | coding (329/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | CP009273 | 4535424 = | 429 (1.330) | coding (512/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 598 total aligned reads displayed.
CTGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG > CP009273/4535357‑4535489 | tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:23632913/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:31993847/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:11093672/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:9298408/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:2627086/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGACTAATCGCGCGCGTGGt > 1:25491727/1‑68 (MQ=255) ggATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGtt < 1:15186058/68‑1 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:8212105/1‑68 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:5486209/1‑68 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:27630498/1‑68 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:10991209/1‑68 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:10758685/1‑68 (MQ=255) aTGTTGGACAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:27800491/1‑68 (MQ=255) cagcagattcataccggcgacagaagccgtattcagccccatactggcgagttgcgcgcgtgGTtat < 1:21995525‑M2/5‑1 (MQ=255) gttgttCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:23887137/1‑68 (MQ=255) gTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:15726092/1‑68 (MQ=255) gTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:20171000/1‑68 (MQ=255) gTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:17642165/1‑68 (MQ=255) gTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:31012069/1‑68 (MQ=255) gTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:6555511/1‑68 (MQ=255) gTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:10564974/1‑68 (MQ=255) gTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:7521256/1‑68 (MQ=255) gggcagcagCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcc < 1:24826459/65‑1 (MQ=255) ggTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATAtt > 1:7209802/1‑66 (MQ=255) ggTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATAtt > 1:2095948/1‑66 (MQ=255) ggTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATAtt > 1:390660/1‑66 (MQ=255) ggTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATAtt > 1:1410465/1‑66 (MQ=255) ggTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATAtt > 1:46233/1‑66 (MQ=255) ggTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATAtt > 1:14587557/1‑66 (MQ=255) tCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcct > 1:30380946/1‑67 (MQ=255) tCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcct > 1:5078117/1‑67 (MQ=255) tCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcct < 1:5708037/67‑1 (MQ=255) tCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcct < 1:1978461/67‑1 (MQ=255) cagcagCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcctcc < 1:785751/68‑1 (MQ=255) gcagcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTg > 1:15905411/1‑68 (MQ=255) gcagcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCACCTg > 1:15505042/1‑68 (MQ=255) agcGACTGAAGCTGAGGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGa < 1:23203861/67‑1 (MQ=255) agcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGa < 1:24098101/67‑1 (MQ=255) agcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGa < 1:21544708/67‑1 (MQ=255) agcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGa < 1:2718101/67‑1 (MQ=255) agcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAg > 1:19297495/1‑68 (MQ=255) gACTGAACCTGTCGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:6088636/66‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAg < 1:24295947/65‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAg < 1:10009021/65‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:19012795/66‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:13224751/66‑1 (MQ=255) gACTGAACCAGACGCTCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:21821307/66‑1 (MQ=255) aCCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGa > 1:18165585/1‑67 (MQ=255) aCCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGa > 1:25941699/1‑67 (MQ=255) ccTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATc < 1:23018549/68‑1 (MQ=255) ccTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATc < 1:11443367/68‑1 (MQ=255) ccTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATc < 1:13419363/68‑1 (MQ=255) tGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATccc > 1:14265171/1‑68 (MQ=255) aCGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCgg > 1:7721551/1‑68 (MQ=255) cGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGt > 1:30792911/1‑68 (MQ=255) cGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGt > 1:16485394/1‑68 (MQ=255) gATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTa > 1:28124600/1‑68 (MQ=255) gATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTa < 1:4418941/68‑1 (MQ=255) gATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTa > 1:8344433/1‑68 (MQ=255) gATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTa < 1:31665755/68‑1 (MQ=255) gATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTa < 1:975762/68‑1 (MQ=255) gATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTa < 1:26833914/68‑1 (MQ=255) gATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTa > 1:26088407/1‑68 (MQ=255) cccTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:11772945/50‑1 (MQ=255) ccTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTaa > 1:12869797/1‑68 (MQ=255) cTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAAt < 1:29992411/68‑1 (MQ=255) ggCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCg > 1:31204918/1‑68 (MQ=255) ggCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCg > 1:2952235/1‑68 (MQ=255) ggCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCg > 1:24565038/1‑68 (MQ=255) ggCATTTATGAGTAATCGCGCACGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCg > 1:25308986/1‑68 (MQ=255) gCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCgg > 1:22541293/1‑68 (MQ=255) cATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCgg < 1:16167138/67‑1 (MQ=255) cATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCgg < 1:8692363/67‑1 (MQ=255) cATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGa > 1:17910317/1‑68 (MQ=255) aTTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGAt > 1:18414604/1‑68 (MQ=255) tATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc < 1:900691/68‑1 (MQ=255) tATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc < 1:3777006/68‑1 (MQ=255) aTGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc > 1:28513035/1‑67 (MQ=255) aTGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc > 1:14750739/1‑67 (MQ=255) aTGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc > 1:15032847/1‑67 (MQ=255) aTGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc > 1:2656959/1‑67 (MQ=255) tGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTc > 1:3318780/1‑68 (MQ=255) gAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTACTCa < 1:19425793/68‑1 (MQ=255) gTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTATTGCCGGATTGCTCAAt < 1:12045297/68‑1 (MQ=255) gTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt > 1:1016113/1‑68 (MQ=255) gTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt > 1:4758922/1‑68 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTTTGGGATCCCGGTATTAATGCCGGATTGCTCAAt < 1:29231595/66‑1 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt < 1:16975613/66‑1 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt < 1:1869789/66‑1 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt < 1:20021743/66‑1 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATta > 1:13820928/1‑68 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGAGCCCGGTATTAATGCCGGATTGCTCAAt < 1:13912238/66‑1 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTCAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt < 1:21189238/66‑1 (MQ=255) cgcgcgcgTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATaa > 1:5390653/1‑68 (MQ=255) cgcgcgcgTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATaa > 1:4184670/1‑68 (MQ=255) cgcgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTAAATTATAAtt > 1:2048997‑M2/9‑68 (MQ=255) cgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTc > 1:12402701‑M2/7‑68 (MQ=255) cgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCa > 1:26463916‑M2/5‑67 (MQ=255) gGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCg < 1:17485486‑M2/66‑1 (MQ=255) gGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCg < 1:29014467‑M2/66‑1 (MQ=255) | CTGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG > CP009273/4535357‑4535489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |