| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4620353 | 295 (0.770) | 7 (0.020) | 3/94 | NT | 2.5% | intergenic (‑14/‑197) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble |
| ? | CP009273 | = 4620382 | 305 (0.940) | intergenic (‑43/‑168) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 156 total aligned reads displayed.
ATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4620278‑4620353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttcgcctTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCATG < CP009273/4620382‑4620316 ATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGA < 1:24761152/68‑1ATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGA < 1:20166216/68‑1ATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGA < 1:3843341/68‑1ATATGACGTTGCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGA < 1:5789695/68‑1 ATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACT > 1:16504972/1‑68 ATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACT < 1:13530763/68‑1 ATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACT < 1:15204558/68‑1 ACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTC > 1:15341972/1‑67 ACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTC > 1:4751005/1‑67 CGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGC < 1:14045121/68‑1 CGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGC < 1:25525877/68‑1 GTTTCGGCTGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:12576181/68‑1 GTTTCGGCGTAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:4770188/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACTAATTGAGCCACGTTGGACTTCGCC < 1:6081668/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:21843824/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:23502662/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:19505065/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:18651545/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:25976491/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:25675539/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:978922/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:27721381/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:29299998/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:29830060/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:5222570/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:7189091/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:8596514/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:9091225/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:16978681/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:14744984/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:13902496/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:13314145/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:1012311/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:10816748/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG > 1:4940007/1‑66 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG > 1:7539017/1‑66 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG > 1:25209389/1‑66 GTTTCGGAGGAACAACTTTGACGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:22755887/68‑1 TTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC > 1:19733376/1‑66 GTATAAACGAATTGAGCCACGTTGGACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCG > 1:14744676/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:24248319/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:28698402/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:24943206/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:16851850/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:27090503/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:27398036/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCACAATTCGTTT > 1:21492229/1‑68 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCTAAGTCCAACGTGGCTCAATTCGTTTA > 1:6760380/1‑68 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTA > 1:31802451/1‑68 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTA > 1:27063194/1‑68 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTA > 1:19801082/1‑68 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTAAAATCGTTTA > 1:29711732/1‑68 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:21957228/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:18160450/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:18952032/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:10084158/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:12807097/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:11989018/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:3819897/68‑1 TTCGCCTTTGAAAACTCATTATCACGAAAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:21377665/68‑1 TTCGCCTTTGAAAACTCATTATCAAGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:649789/68‑1 TCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATA < 1:12761214/68‑1 TCGCCTTTGAAAACTCATTATCACGATAAACATACAGGCTAAGTACAACGTGGCTCAATACGTTTAT > 1:8694559/1‑67 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:11475633/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:11090485/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:678146/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:18002796/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:10945846/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:9097273/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:6107354/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:10273556/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:8205924/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:7278662/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:19026967/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:20211050/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:14370244/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:25191393/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:32083170/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:26484881/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:2012763/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:1213489/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:30167641/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:30356324/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:19544243/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:1646007/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:30626502/68‑1 CGCCTTTGAAAACTAATTATAACGTTATACATAGAGGCGAAGTCGAACGTGGCTCAATTCGTTTATAC < 1:1105560/68‑1 GCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACC < 1:29498464/68‑1 GCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACC > 1:4143040/1‑68 GCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACC > 1:7964598/1‑68 CCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA > 1:10643657/1‑68 CTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA < 1:6426233/67‑1 CTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA < 1:1255031/67‑1 CTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA < 1:30513754/67‑1 TTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCATG < 1:15048580/68‑1 TTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCATG < 1:3579080/68‑1 TTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCAT > 1:20595718/1‑67 TTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCAT > 1:26054368/1‑67 TTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCAT > 1:2019253/1‑67 TTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCAT > 1:4005642/1‑67 ATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4620278‑4620353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttcgcctTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCATG < CP009273/4620382‑4620316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |