| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4620353 | 295 (0.770) | 7 (0.020) | 3/94 | NT | 2.5% | intergenic (‑14/‑197) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble |
| ? | CP009273 | = 4620382 | 305 (0.940) | intergenic (‑43/‑168) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 571 total aligned reads displayed.
TTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGCC > CP009273/4620287‑4620420 | ttCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCctc < 1:18548347/68‑1 (MQ=255)tgcggcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCctc < 1:20357792/66‑1 (MQ=255) cggcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTa < 1:31477577/68‑1 (MQ=255) ggcggAACAACTTTGCCGACACGATGCATGGTATATACGAATTGAGCCACGTTGGACTTCGCCTCTaa < 1:30403532/68‑2 (MQ=255) ggcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTAt < 1:24522474/68‑1 (MQ=255) gcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg > 1:24650084/1‑68 (MQ=255) gcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg > 1:9218769/1‑68 (MQ=255) cggAACAACTTTGCCGTCACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:30959890/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTTAGCCACGTTGGACTTCGCCTCTATg < 1:31889031/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:31626647/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:8611676/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:22424846/67‑1 (MQ=255) caacTTTGGCGACACGTTGCATGGTATAAACTAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATc < 1:29525083/68‑1 (MQ=255) caacTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATc < 1:19796669/68‑1 (MQ=255) aacTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCg > 1:5774803/1‑68 (MQ=255) acTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGt < 1:29334323/68‑1 (MQ=255) tttGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGa > 1:3774681/1‑68 (MQ=255) tttGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGa > 1:2858164/1‑68 (MQ=255) tttGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGa < 1:4302472/68‑1 (MQ=255) cGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATg > 1:26510001/1‑68 (MQ=255) cGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGttt < 1:13883560/68‑1 (MQ=255) cGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGttt > 1:14843941/1‑68 (MQ=255) cGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGttt < 1:29784947/68‑1 (MQ=255) cATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAa < 1:15048580‑M2/68‑2 (MQ=255) aTGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAa > 1:4005642‑M2/1‑66 (MQ=255) tGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAagg > 1:10643657‑M2/1‑65 (MQ=255) tGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAag < 1:30513754‑M2/67‑3 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTttgaaaactcattatcacgataaacatagaggcg > 1:15316193‑M1/1‑34 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:32083170‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:19026967‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:8898483‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:1646007‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:8205924‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:11475633‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:7658463‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTCGACTTCGCCTCTATGTATAACGTTATAATTAGTTTTCAAaggcg < 1:1105560‑M2/68‑6 (MQ=255) ataAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaa < 1:11989018‑M2/68‑8 (MQ=255) aaaCGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaagt > 1:27398036‑M2/1‑59 (MQ=255) aaaCGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaagt > 1:16851850‑M2/1‑59 (MQ=255) aaCGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAgtg > 1:13610865/1‑68 (MQ=255) aaCGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAgtg > 1:2512278/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTttgaaaactcattatcacgataaacatagaggcgaagtcc > 1:23845283‑M1/1‑27 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGACGTGTa > 1:10999028/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:13163813/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:12885968/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:29704196/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:25528870/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:7977613/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:7348644/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:22959237/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:7833058/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:22137112/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:18258887/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:19963037/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:1778874/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:32033063/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCGCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:15573223/1‑68 (MQ=255) aaTTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAg > 1:12303012/1‑67 (MQ=255) aTTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGc < 1:5467320/67‑1 (MQ=255) tGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCtt > 1:19514483/1‑68 (MQ=255) gCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCtttt > 1:24166252/1‑67 (MQ=255) cACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTc < 1:24833452/67‑1 (MQ=255) gTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCg < 1:25999472/68‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaagtccaacgtggctcaattcg > 1:3480405‑M2/1‑41 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGcc < 1:2165522/68‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGc < 1:11339649/67‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGc < 1:19174475/67‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGc < 1:26245967/67‑1 (MQ=255) acatCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGACTaa > 1:29257650/4‑68 (MQ=255) aCTTCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgttt > 1:27090503‑M1/1‑9 (MQ=255) aCTTCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggcacaattcgttt > 1:21492229‑M1/1‑9 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:28768434/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:11697771/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCCCCTaa > 1:26861319/1‑68 (MQ=255) cTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa < 1:27979316/67‑1 (MQ=255) cTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa < 1:6073069/67‑1 (MQ=255) cTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAAt < 1:9633539/68‑1 (MQ=255) cTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAAt < 1:17140120/68‑1 (MQ=255) ttCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttat < 1:10084158‑M1/68‑62 (MQ=255) ttCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttat < 1:12807097‑M1/68‑62 (MQ=255) ttCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttat < 1:16247435‑M1/68‑62 (MQ=255) ttCGCCTttgaaaactcattatcaagataaacatagaggcgaagtccaacgtggctcaattcgtttat < 1:649789‑M1/68‑62 (MQ=255) ttCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATc < 1:30241105/68‑1 (MQ=255) ttCGCCAttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttat < 1:30714637‑M1/68‑62 (MQ=255) tCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttat > 1:712354‑M1/1‑6 (MQ=255) cgactttgaaaactcattatcacgataaacatagtggcgaagtccaacgtggctcaattcgtttatac < 1:4615109‑M1/65‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:18002796‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:10273556‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:9097273‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:12671362‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:14370244‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:21115639‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:678146‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:2012763‑M1/68‑64 (MQ=255) gCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCa > 1:23579435/1‑68 (MQ=255) gCCTCTATGATTATCGTGATAATGAGTTTTCAAaggcgaagtccaacgtggctcaattcgtttatac > 1:20545054‑M2/1‑33 (MQ=255) ccTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatacca > 1:635461‑M1/1‑3 (MQ=255) ccTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCa > 1:5093261/1‑67 (MQ=255) ctctATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGc < 1:18710590/68‑1 (MQ=255) tctATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGcc < 1:25228835/68‑1 (MQ=255) | TTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGCC > CP009273/4620287‑4620420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |