| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 138472 | NA (NA) | 3 (0.010) | 3/94 | NT | NA | noncoding (8/21 nt) | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 138477 | NA (NA) | noncoding (13/21 nt) | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 211 total aligned reads displayed.
GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/138398‑138472‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggatgCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGATGAC < CP009273/138477‑138411 GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG < 1:23743546/68‑1GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG < 1:16963559/68‑1GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG < 1:31454486/68‑1GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG < 1:1409743/68‑1GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG < 1:13159705/68‑1GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG < 1:11652244/68‑1GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTT > 1:11233354/1‑67GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTT > 1:22584687/1‑67GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTT > 1:19581337/1‑67GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTT > 1:22548514/1‑67GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTT > 1:27872386/1‑67GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTT > 1:10928088/1‑67GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTT > 1:31145534/1‑67GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTT > 1:10373055/1‑67 CACAGCGTTCCCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGATGAGTAAGTGTGAAGTTG > 1:18682791/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:20770900/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:28145326/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:27547414/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:26953081/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:21341105/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:24747123/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:3132527/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:22747585/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:22335183/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:28876076/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:2922417/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:30508527/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:9769459/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:31721113/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:4143592/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:4617339/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:6110529/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:6451592/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:6957872/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:7357237/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:7759007/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:8394236/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:9268021/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:10020965/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:16438698/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:10156635/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:11046282/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:1114095/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:12009499/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:17221551/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:1745073/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:19100134/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:1943270/1‑67 CACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTG > 1:20153528/1‑67 ACAGCGTTACCGTCATCTGCCGTATATCGTCAAATTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCa > 1:2842597/1‑67 ACAGCGTTACCGTCATCTGCCGTATATCGGCATAGTGATTCTTCTGGACGAGTAAGTGTGAACTTGCC > 1:25897574/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:26781773/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:5783887/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:12871550/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:13458259/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:27448481/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:27253866/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:27213725/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:15199899/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:14328829/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:795865/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:14169070/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:25454840/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:9639294/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:31774394/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCC > 1:20019991/1‑68 ACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGC < 1:1625782/67‑1 ACAGCGTTACCGTCAGCTGCCGTATATCGGCAAAGGGGGTCTGCTGGACGAGTAAGTGTGAAGTTACC > 1:22068397/1‑68 CAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCG > 1:3866527/1‑68 GCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGA > 1:1600282/1‑68 CGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGtt > 1:3535969/1‑66 CGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGAT > 1:29164759/1‑68 CGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGAT > 1:5106703/1‑68 CGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGAT > 1:17772066/1‑68 GTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATG > 1:4750077/1‑68 GTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATG > 1:24402516/1‑68 GTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGA < 1:6982421/66‑1 GTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCG < 1:10502207/64‑1 ACCGTCATCTGCCGGATATCGGCAAAGTGATTCTGCTGCACGAGTAAGGGTGAAGTTGCCGGTTGggt > 1:11356309/1‑65 GCCGGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATTTACGGC < 1:20129046/68‑1 GCCGGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGC < 1:8667976/68‑1 GCCGGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGC < 1:26466124/68‑1 GCCGGATGCAACACATCCGGCAACTTCACACTTACTCGTCCACCAGAATCACTTTGCCGATATACGGC < 1:30282849/68‑1 CCGGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCA > 1:29769032/1‑68 CGGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAG > 1:26409765/1‑68 CGGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAG > 1:11543855/1‑68 CGGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAG < 1:22157992/68‑1 CGGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATACACGGCAG < 1:254842/68‑1 GGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGA < 1:21058343/68‑1 GGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGA < 1:13994958/68‑1 GGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGA < 1:8165043/68‑1 GGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGA < 1:20501873/68‑1 GGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGA < 1:16576789/68‑1 GGATGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGA < 1:5600112/68‑1 TGCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGATG < 1:21853430/67‑1 GCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGATGAC > 1:17079074/1‑68 GCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGATGAC > 1:21260481/1‑68 GCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGATGAC > 1:20691709/1‑68 GCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGATGAC > 1:17984438/1‑68 GCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTATGCCGATATAAGGCATATGA > 1:4514958/1‑67 GCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/138398‑138472‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggatgCAACACATCCGGCAACTTCACACTTACTCGTCCAGCAGAATCACTTTGCCGATATACGGCAGATGAC < CP009273/138477‑138411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |