| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 138472 | NA (NA) | 3 (0.010) | 3/94 | NT | NA | noncoding (8/21 nt) | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 138477 | NA (NA) | noncoding (13/21 nt) | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 521 total aligned reads displayed.
GTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTG > CP009273/138405‑138539 | gTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATG > 1:24402516‑M1/1‑68 (MQ=255) tACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGAtgt < 1:12884596/67‑1 (MQ=255) aCCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATgtgt < 1:10571731/68‑1 (MQ=255) aCCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATgtgt > 1:9493494/1‑68 (MQ=255) aCCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATgtgt < 1:6802490/68‑1 (MQ=255) aCCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATgtgt < 1:5727336/68‑1 (MQ=255) aCCGGCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATgtgt < 1:26587833/68‑1 (MQ=255) cGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt > 1:18653190/1‑67 (MQ=255) cGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt > 1:115095/1‑67 (MQ=255) cGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt > 1:11639445/1‑67 (MQ=255) cGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt > 1:28020618/1‑67 (MQ=255) cGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt > 1:31524500/1‑67 (MQ=255) cGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt > 1:431053/1‑67 (MQ=255) cGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt > 1:4581733/1‑67 (MQ=255) cGTCATCTGCCGTATATCGGCAAAGTGAGTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt > 1:10043780/1‑67 (MQ=255) gTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGc > 1:17079074‑M2/1‑67 (MQ=255) cATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGct < 1:10963434‑M2/67‑3 (MQ=255) cATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGca < 1:28664706‑M2/67‑3 (MQ=255) cATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGca < 1:26787291‑M2/67‑3 (MQ=255) tCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatcc < 1:21058343‑M2/68‑6 (MQ=255) tCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatcc < 1:31736668‑M2/68‑6 (MQ=255) tCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatcc < 1:20501873‑M2/68‑6 (MQ=255) tCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatcc < 1:13994958‑M2/68‑6 (MQ=255) cTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatccg < 1:22157992‑M2/68‑7 (MQ=255) tGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatccgg > 1:25483599‑M2/1‑61 (MQ=255) tGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatccgg > 1:16971741‑M2/1‑61 (MQ=255) gCCGTATATCGGCAAAGTGATTCTGGTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatccggc < 1:30282849‑M2/68‑9 (MQ=255) gCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatccggc < 1:8517696‑M2/68‑9 (MQ=255) gCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGcatccggc < 1:16496018‑M2/68‑9 (MQ=255) atatCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggc < 1:9347562/68‑1 (MQ=255) atatCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggc < 1:9791711/68‑1 (MQ=255) atatCGGCAAAGTGATTCTGCTGGACGAGTAAGTGGGACGTTGCCGGATGTGTTGCATCCggcatggc < 1:30036839/68‑1 (MQ=255) atatCGGCAAAGTGATTCTGCTGGACGAGGAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggc < 1:8782683/68‑1 (MQ=255) atCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggcat > 1:25966066/1‑68 (MQ=255) atCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggcat > 1:10433499/1‑68 (MQ=255) atCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggcat > 1:23536020/1‑68 (MQ=255) atCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggcat > 1:31176080/1‑68 (MQ=255) atCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggcat > 1:2147777/1‑68 (MQ=255) atCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggcat > 1:8224859/1‑68 (MQ=255) ggCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCAtttt > 1:20423713/1‑68 (MQ=255) gCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCAttttt > 1:29786552/1‑68 (MQ=255) gCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCAttttt > 1:1830673/1‑68 (MQ=255) gCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCAttttt > 1:26441182/1‑68 (MQ=255) cAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTa > 1:21719685/1‑68 (MQ=255) gctgaaacacgccaaccacaaataaaaatgccaTGCCGGATGTGTTGCATCCGGCATGGCATTTTTAt < 1:17176016‑M1/35‑1 (MQ=255) ctgaaacacgccaaccacaaataaaaatgccaTGCCGGATGTGTTGCATCCGGCATGGCATTTTTAtt < 1:19616214‑M1/36‑1 (MQ=255) gATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTtgtg > 1:20259665/1‑68 (MQ=255) gATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTtgtg < 1:25580981/68‑1 (MQ=255) acacgccaaccacaaataaaaatgccaTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTgg < 1:3867436‑M1/41‑1 (MQ=255) tCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGtt > 1:18917304/1‑68 (MQ=255) tgctgGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTg > 1:10770826/1‑67 (MQ=255) tgctgGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTg > 1:2295916/1‑67 (MQ=255) tgGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCgt > 1:3464538/1‑68 (MQ=255) tgGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCgt > 1:23292258/1‑68 (MQ=255) tgGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCgt < 1:27276724/68‑1 (MQ=255) cacaaataaaaatgccaTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGtt < 1:22701597‑M1/51‑1 (MQ=255) aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCgtgt < 1:29371857/67‑1 (MQ=255) aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCgtgt < 1:24091091/67‑1 (MQ=255) aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCgtgt < 1:4072994/67‑1 (MQ=255) aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCgtgt < 1:15182242/67‑1 (MQ=255) aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGtt > 1:5158491/1‑68 (MQ=255) aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGtt > 1:30951077/1‑68 (MQ=255) aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGtt > 1:13754803/1‑68 (MQ=255) aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGtt > 1:2005042/1‑68 (MQ=255) aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGtt > 1:25200567/1‑68 (MQ=255) tAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCa > 1:7089837/1‑66 (MQ=255) aaGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGc < 1:4789056/67‑1 (MQ=255) aaGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGc < 1:2473661/67‑1 (MQ=255) aaGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCt > 1:14443049/1‑68 (MQ=255) tgtgAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGa > 1:15869058/1‑68 (MQ=255) tgtgAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGa > 1:27521485/1‑68 (MQ=255) tgtgAAGTTGCCGGATGTGTTGCATCAGGCATGGCATTTTTATTTGTGGTTGTCGTGTTTCAGCTTGa > 1:6380696/1‑68 (MQ=255) gtgAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAg > 1:16290055/1‑68 (MQ=255) gtgAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAg > 1:15691674/1‑68 (MQ=255) gtgAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAg > 1:29015456/1‑68 (MQ=255) gtgAAGTTGCCGGATGGGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAg < 1:7521386/68‑1 (MQ=255) gAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGt < 1:1230842/68‑1 (MQ=255) aGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTg > 1:22053359/1‑68 (MQ=255) aGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTg > 1:30612529/1‑68 (MQ=255) aGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTg > 1:13335671/1‑68 (MQ=255) aGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTg < 1:5438934/68‑1 (MQ=255) gTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTgg > 1:1610041/1‑68 (MQ=255) gTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTgg > 1:13197355/1‑68 (MQ=255) gTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTgg > 1:28348182/1‑68 (MQ=255) gTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTgg > 1:17588479/1‑68 (MQ=255) TGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTgg > 1:19099684‑M1/1‑66 (MQ=255) TGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGaa < 1:6159663‑M1/68‑1 (MQ=255) TGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGa > 1:14284892‑M1/1‑67 (MQ=255) gCCGGATGcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggc < 1:8667976‑M1/68‑61 (MQ=255) ggATGcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggcaga < 1:26136245‑M1/68‑64 (MQ=255) ggATGcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggcaga < 1:16795888‑M1/68‑64 (MQ=255) ggATGcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggcaga < 1:27028705‑M1/68‑64 (MQ=255) ggATGcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggcaga < 1:11918148‑M1/68‑64 (MQ=255) GATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATccc < 1:7969836‑M1/68‑1 (MQ=255) tGcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggcagatg < 1:21853430‑M1/67‑66 (MQ=255) tGcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggcagatg > 1:11300817‑M1/1‑2 (MQ=255) TGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGt < 1:9112894‑M1/68‑1 (MQ=255) gcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggcagatgac > 1:17984438‑M1/1‑1 (MQ=255) gcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggcagatgac > 1:21260481‑M1/1‑1 (MQ=255) gcaacacatccggcaacttcacacttactcgtccagcagaatcactttgccgatatacggcagatgac > 1:20691709‑M1/1‑1 (MQ=255) | GTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTG > CP009273/138405‑138539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |