New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 173463	NA (NA)	6 (0.020)	3/88	NT	NA	noncoding (8/19 nt)	REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	CP009273	= 173466	NA (NA)					noncoding (11/19 nt)	REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences

GACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/173387‑173463 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgccggataGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  <  CP009273/173466‑173400                                                                                                                                                  GACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATG                                                                              <  1:474743/68‑1  ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             >  1:9352654/1‑68  ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             >  1:891529/1‑68  ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATATGTTGTTCATGT                                                                             >  1:23060707/1‑68   CCAACCGGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             <  1:9759196/67‑1   CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             >  1:9793666/1‑67   CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             <  1:7475424/67‑1   CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             <  1:5894208/67‑1   CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             <  1:31144793/67‑1   CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             >  1:26333503/1‑67   CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             >  1:20532347/1‑67   CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             >  1:20586525/1‑67   CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT                                                                             <  1:21091721/67‑1    CAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTG                                                                            >  1:30570493/1‑67    CAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTG                                                                            >  1:18535526/1‑67      ACCCGAACGCTAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:1867508/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:23934623/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:24651796/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:10706123/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:25622159/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:26055595/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:20082549/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:19085726/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:30440316/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:24667820/68‑1      ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG                                                                         <  1:13818450/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        >  1:15552588/1‑68       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        >  1:13844612/1‑68       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:29082535/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:28581272/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:18636148/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        >  1:26961150/1‑68       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:31574229/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        >  1:26516760/1‑68       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:31824412/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:25863618/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:15448861/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:5597620/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:6479917/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:15631821/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:2332555/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:19048111/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:11551930/68‑1       CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG                                                                        <  1:11589524/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:23646079/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:30843170/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:1107292/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:18366828/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       >  1:8750339/1‑68        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:26489915/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:31785405/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:173412/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:17295477/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:22654990/68‑1        CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA                                                                       <  1:7444814/68‑1         CGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGAT                                                                      >  1:21074714/1‑68                                           CTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCGCATGAACAACAGGTTTGAT                                      >  1:26289283/1‑66                                           CTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATAC                                    >  1:17894320/1‑68                                           CTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGAT                                      >  1:11941910/1‑66                                           CTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGAT                                      >  1:31454914/1‑66                                                  ATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGA                             >  1:6945863/1‑68                                                       ATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAA                         >  1:24037160/1‑67                                                             TGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAA                   >  1:29829846/1‑67                                                                TCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGC               >  1:24388829/1‑68                                                                   TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG            >  1:8547417/1‑68                                                                   TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG            >  1:31532422/1‑68                                                                   TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG            >  1:28449043/1‑68                                                                   TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG            >  1:10963577/1‑68                                                                   TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG            >  1:28874564/1‑68                                                                   TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG            >  1:16047559/1‑68                                                                   TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG            >  1:14924075/1‑68                                                                   TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG            >  1:15320655/1‑68                                                                     TGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT           >  1:8530638/1‑67                                                                     TGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT           >  1:4954602/1‑67                                                                      GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT           >  1:6367975/1‑66                                                                      GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT           >  1:18483188/1‑66                                                                       CCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT        >  1:7857777/1‑68                                                                       CCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT        >  1:11800681/1‑68                                                                        CGGATAGTTTATCCGGCACATGAACAGCAGATTAGATACTAAAGGAAGCACCGCACCCGCAGGTGCTT       >  1:19400180/1‑68                                                                        CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT       >  1:21098567/1‑68                                                                        CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT       >  1:14550757/1‑68                                                                        CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT       >  1:27721368/1‑68                                                                        CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT        <  1:9636404/67‑1                                                                         GGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTT      >  1:26664678/1‑68                                                                           tTAGTTTATCCGGCACATGAACAACAGATTAGATACTATAGGAAGAACCGCAACCGCAGGTGCTTTTC    >  1:2553525/2‑68                                                                           ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC    >  1:25226378/1‑68                                                                           ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC    >  1:31964886/1‑68                                                                             AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  >  1:15523180/1‑68                                                                             AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  >  1:9377832/1‑68                                                                             AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  >  1:18769677/1‑68                                                                             AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  >  1:19114759/1‑68                                                                             AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  >  1:20103845/1‑68                                                                             AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  >  1:22740358/1‑68                                                                             AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  >  1:29188296/1‑68                                                                             AGTTTATCCGGCACATGAACAACAGATTACATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  >  1:1324778/1‑68                                                                                                                                                  GACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/173387‑173463 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgccggataGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC  <  CP009273/173466‑173400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.