| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 173463 | NA (NA) | 6 (0.020) | 3/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 430 total aligned reads displayed.
ACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGA > CP009273/173398‑173530 | aCGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa < 1:10244903/67‑1 (MQ=255)aCGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa < 1:22180568/67‑1 (MQ=255)aCGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa < 1:29630850/67‑1 (MQ=255) cgcgAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa > 1:15298682/1‑66 (MQ=255) cgcgAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGACGGATaa > 1:29055304/1‑66 (MQ=255) gcgAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACt > 1:22740358‑M2/1‑67 (MQ=255) gcgAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACt > 1:19114759‑M2/1‑67 (MQ=255) gcgAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACt > 1:18769677‑M2/1‑67 (MQ=255) aaaGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatcc > 1:26664678‑M2/1‑63 (MQ=255) aGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccgg > 1:7857777‑M2/1‑61 (MQ=255) aCCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggca > 1:4954602‑M2/1‑58 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:8547417‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:16047559‑M2/1‑57 (MQ=255) tgctgttgcggtTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtc < 1:32007499/68‑1 (MQ=255) tgcggttgcggtTCTTCCTTTAGTATCTAATCTGCTGTTCATGTGCCGGATAAACTATCCGGCACAtc < 1:3263818/68‑1 (MQ=255) gcggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcacatga > 1:24388829‑M2/1‑54 (MQ=255) gcggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtct < 1:51349/68‑1 (MQ=255) gcggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtct < 1:16611363/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:18029764/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:18375677/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:27537335/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:10621949/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:24863954/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:27690255/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:19338563/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:761916/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:16179499/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:20231224/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:27328912/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:5393287/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:15601950/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:16976175/68‑1 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAgtttatccggcacatgaacaacagattagat > 1:31454914‑M1/1‑35 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:25640063/1‑68 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:8904374/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:9465065/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:30501313/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:4304607/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:21767635/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:24297751/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:21043416/1‑67 (MQ=255) aGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:9867374/1‑66 (MQ=255) aGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:12918342/1‑66 (MQ=255) gTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcacatgaacaacagattagatactaaag > 1:17894320‑M2/1‑33 (MQ=255) gTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtc > 1:31223223/1‑67 (MQ=255) gTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCACATtc > 1:1772471/1‑67 (MQ=255) tATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtctc > 1:30769264/1‑68 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAgtttatccggcacatgaacaacagattagatactaaagga > 1:6945863‑M1/1‑28 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcacatgaacaacagattagatactaaag > 1:11941910‑M2/1‑31 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtct < 1:1355319/66‑1 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtct < 1:19630350/66‑1 (MQ=255) aTCTGTTGTTCATGTGCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaa > 1:24037160‑M1/1‑23 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:6210248/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:26794078/1‑67 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:10428361/1‑68 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc < 1:11190206/68‑1 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc < 1:4706439/68‑1 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:28044991/1‑68 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgcg < 1:1262359/68‑1 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:18525826/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:27081008/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:21378100/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:20823515/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:13897437/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:15056685/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:17546771/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:26343793/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTAAACGCCCATTCTCATCCAgc > 1:19768188/1‑67 (MQ=255) ttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:2337239/48‑1 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaaa < 1:2927568/68‑1 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaaa < 1:5753707/68‑1 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaa > 1:22930630/1‑67 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaa > 1:22650469/1‑67 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaa > 1:6900126/1‑67 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaa > 1:26134754/1‑67 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCACCGCCCATTCTCATCCAGCGCAAACg > 1:7391160/1‑67 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg < 1:9080510/67‑1 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg > 1:8237414/1‑67 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg < 1:13107837/67‑1 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCACCGCCCATTCTCATCCAGCGCAAACGTCg > 1:28287287/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:15475188/1‑68 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg > 1:31532422‑M1/1‑11 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg > 1:28449043‑M1/1‑11 (MQ=255) tgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggt > 1:8530638‑M1/1‑9 (MQ=255) tgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa > 1:3894076/1‑68 (MQ=255) gCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggt > 1:6367975‑M1/1‑8 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAATGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:5317336/68‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa < 1:26478446/67‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:18216870/68‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:2986593/68‑1 (MQ=255) ccGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgct > 1:11800681‑M1/1‑7 (MQ=255) ccGGATAAACTGTCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa > 1:14108118/1‑66 (MQ=255) cGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgctt > 1:14550757‑M1/1‑6 (MQ=255) cGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgct < 1:9636404‑M1/67‑62 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:31019247/67‑1 (MQ=255) ggATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCtt < 1:31898948/68‑1 (MQ=255) ttagtttatccggcacatgaacaacagattagatactataggaagaaccgcaaccgcaggtgcttttc > 1:2553525‑M1/2‑3 (MQ=255) aTAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgcttttc > 1:25226378‑M1/1‑3 (MQ=255) agtttatccggcacatgaacaacagattacatactaaaggaagaaccgcaaccgcaggtgcttttcgc > 1:1324778‑M1/1‑1 (MQ=255) aaaCTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGa < 1:28700240/68‑1 (MQ=255) | ACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGA > CP009273/173398‑173530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |