| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 311 (0.810) | 430 (1.140) | 25/110 | NT | 52.3% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 480 (1.270) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 487 total aligned reads displayed.
GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/360029‑360096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCA > CP009273/3508417‑3508482 GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC > 1:27807017/1‑68GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC > 1:5352246/1‑68GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC < 1:19325619/68‑1GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC > 1:22719600/1‑68 gTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAC > 1:8074679/2‑68 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGA < 1:26794628/68‑1 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:21063033/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:18157109/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:1673157/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:1851717/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:6502245/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:6704/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:19568746/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:19955519/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:20792310/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:445498/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:12605907/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:8974039/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:3528740/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:27266273/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:10026873/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:28419482/1‑67 GATAACCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:9620703/1‑67 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGATAATTATTTTTTCGCTGGTGAAACGACT < 1:10284268/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:12020369/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:9450199/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:14388414/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:9187683/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:30183522/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:13213987/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:31867674/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAC > 1:28584709/1‑67 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAC > 1:5814825/1‑67 TAAGCTGTCAAACATGAGAATTCCATCAGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAC > 1:21661602/1‑67 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGATTTATTTTTTCGCGGGTGAAACGCCT > 1:19727549/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:30451556/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:24711240/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:3284448/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:31327309/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:25824887/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:23343332/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:30113051/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:10755047/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:29237301/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:13839600/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:17817999/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:6150162/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:16380023/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:8190964/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:8336940/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:3818651/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:20282076/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:20651313/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:13730271/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:8425725/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:5285150/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:4633736/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:8619534/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTAGCGGGTGAAACGACT > 1:2964896/1‑65 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:29956542/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:9722084/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:10461875/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:27578504/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:27077205/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:11349764/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:16988659/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:25083534/68‑1 catACATGAGAATTGCTTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:31445335/62‑1 CAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTT > 1:2429119/1‑68 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:28241957/68‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:912242/1‑68 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:12179337/68‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:15750748/1‑68 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:4846096/68‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:30989730/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:23688868/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:17375299/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:13053609/1‑67 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:134333/1‑67 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:7389183/1‑68 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:28883286/1‑68 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:11630395/1‑68 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:30738904/1‑68 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:15242141/1‑68 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:24834511/1‑68 TGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAA < 1:22043617/68‑1 AGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAA > 1:26012230/1‑67 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:15504205/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG > 1:7016131/1‑67 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:7761068/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:14737479/67‑1 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA > 1:4127884/1‑68 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC < 1:5497537/67‑1 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC < 1:23016298/67‑1 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC < 1:26481966/67‑1 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:25577845/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:14597236/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:22005372/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:11078192/1‑68 CCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCA > 1:19196749/1‑68 GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/360029‑360096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCA > CP009273/3508417‑3508482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |