| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 311 (0.810) | 430 (1.140) | 25/110 | NT | 52.3% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 480 (1.270) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 1042 total aligned reads displayed.
TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 | gCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCa > 1:13000527/1‑67 (MQ=255) cGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCAt > 1:28151088/1‑67 (MQ=255) ggTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATcc < 1:24403846/68‑1 (MQ=255) tATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCg < 1:25507319/67‑1 (MQ=255) ttCACCCAGGCGGGCAAAATCAGCCGACACCATTGAGGGGGCAATCAAATACCGTTTCATCCGCTtct < 1:22068628/68‑1 (MQ=255) cACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTcc < 1:18593871/68‑1 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:3533336/1‑68 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:28432794/1‑68 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:27546786/1‑68 (MQ=255) ccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTg > 1:11648457/1‑68 (MQ=255) ccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTATCATCCGCTTCTCCTTg > 1:9459975/1‑68 (MQ=255) ggCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTgaga > 1:12289710/1‑68 (MQ=255) ggCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTgaga > 1:3109033/1‑68 (MQ=255) ggCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTgaga > 1:2675426/1‑68 (MQ=255) aaTCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTAttttt < 1:5764878/68‑1 (MQ=255) tCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTc > 1:11964435/1‑68 (MQ=255) tCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTc > 1:3805426/1‑68 (MQ=255) cGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTcgcg < 1:16384400/66‑1 (MQ=255) cGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCggg < 1:21073836/68‑1 (MQ=255) cGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCggg < 1:27869442/68‑1 (MQ=255) cagtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGaa < 1:23249356‑M2/38‑1 (MQ=255) ttGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGa < 1:19930662/68‑1 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:20792310‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:14610186‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:26375555‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:1571982‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:31844664‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:5458535‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:11112391‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:10026873‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGa < 1:23680020‑M2/42‑1 (MQ=255) tGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:19416540/1‑66 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGATAATTATTTTTTCGCTGGTGAAACGACt < 1:10284268‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:19710289‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:5973158‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:9685424‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:9187683‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:813053‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:18373260‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:17599525‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:29976322‑M2/44‑1 (MQ=255) gcgggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:17872002/66‑1 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:21955904/68‑1 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:27352410/68‑1 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:6761259/1‑66 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:5597168/1‑66 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:3044630/1‑66 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:24105978/1‑66 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:14383806/1‑66 (MQ=255) agctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:20240189‑M2/23‑66 (MQ=255) agctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:1905190‑M2/23‑66 (MQ=255) ggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:26032588/1‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:4679605‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:8727137‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:31327309‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:13730271‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:9078221‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:22736581‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:30176998‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:7816204‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:11477906‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTAGCGGGTGAAACGACt > 1:2964896‑M2/22‑65 (MQ=255) gggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTcc < 1:4152364/66‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg > 1:29367355‑M2/20‑68 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:25083534‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:20570107‑M2/49‑1 (MQ=255) gCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:31500051/67‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:10496733‑M2/15‑68 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:5229722‑M2/54‑1 (MQ=255) cAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCggg > 1:14831687/1‑47 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:829997‑M2/55‑1 (MQ=255) aaaTACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTAc > 1:6576670/1‑68 (MQ=255) atgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACa > 1:15242141‑M2/12‑68 (MQ=255) aTACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaa < 1:21425972/68‑1 (MQ=255) aTACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaa > 1:16837700/1‑68 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGACTTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:13943784/68‑1 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:10825031/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:22296915/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:7391060/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:708252/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:4798709/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:4400514/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:3930915/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:22881950/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:28976366/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:17055262/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:162019/68‑1 (MQ=255) aCTGTTTCATCCGCTTCTCATTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:17291409/68‑1 (MQ=255) tGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGcc > 1:24760680/1‑68 (MQ=255) gTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCATGGTTTGTAGAAAGCca < 1:25795275/68‑1 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGc < 1:13210696‑M2/61‑1 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:30804886‑M2/6‑68 (MQ=255) ttccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:13408192‑M2/54‑1 (MQ=255) ttCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:3285233/1‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:12593113‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc < 1:8449741‑M2/65‑1 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:26982301‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCAGGTTTGTACAAAGCcagc > 1:19298982‑M2/4‑68 (MQ=255) ccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagca < 1:6427598‑M2/66‑1 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:286268/1‑68 (MQ=255) | TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |