| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 12 (0.040) | 3/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 267 total aligned reads displayed.
TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1111156‑1111080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT > CP009273/1111111‑1111176 TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGC < 1:29499803/68‑1TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGC < 1:4091568/68‑1 TTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCA < 1:943959/68‑1 TAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCAT < 1:31507347/68‑1 TAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCAT < 1:7137075/68‑1 AACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG < 1:10210074/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:1909904/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:27518497/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:26830850/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:26706620/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:22958091/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:22280058/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:21191054/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:6358934/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:25496393/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:3610468/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:16570842/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:12418161/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:17731205/1‑67 CACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGC < 1:29123397/68‑1 CACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGC < 1:1526623/68‑1 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA > 1:16168984/1‑68 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:17539980/68‑1 GGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCATGGGAG < 1:23717718/68‑1 GGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCATGGGAG < 1:10651828/68‑1 AGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCATGGGAGAT < 1:1713891/67‑1 CCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCATGGGAGATTTAATAGC < 1:30450212/68‑1 CCTTCACGCAATAAAAGCACCCATGCCGGATGCTTCACAATGGCATCCGGCATGGGAGATTTAATAGC < 1:13612434/68‑1 CTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCATGGGAGATTTAATAGCG < 1:25024092/68‑1 CATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTA > 1:13890001/1‑67 CATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTA > 1:31953600/1‑67 ATCCGGCATGGGAGATTTAATAGCGTGATGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:11918599/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:8772147/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:20976174/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:1133679/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:21701814/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:16911907/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:1635478/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAA < 1:30555072/67‑1 CCGGCATTGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:11552300/68‑1 CCGGCATGGGAGATTTAATAGCGTTAAGGAACGCGTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:22643976/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGTGCGTGTTTTAAAGAGACGGTGTAACCA < 1:4326068/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACa > 1:7555671/1‑66 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:31134716/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:28973608/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:29793695/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:29257971/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:8917104/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:31916629/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:3245334/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:3964817/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:418185/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:9707664/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:4957220/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:5151827/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:5512875/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:6035920/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:6558527/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:8152438/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:7496896/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:16755926/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:17754207/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:17944223/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:18195305/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:17282306/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:18659746/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:19178101/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:19767401/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:19863496/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:20212532/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:2059159/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:15880364/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:24230323/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:15710455/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:25114146/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:2600676/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:26444338/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:26903593/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:28169959/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:11188215/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTACGGGCGTGTTTTAAAGCGACTGTGTAACCA < 1:15390323/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACCCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:6872789/68‑1 CCGGCATGGGAGATTTAATAGCGGGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:14476605/68‑1 CCGGCATGGGAGATTAAATACCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:3372788/68‑1 GGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACA < 1:28272348/68‑1 GGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACA < 1:12213240/68‑1 GGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACA < 1:24631185/68‑1 GGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACA < 1:30739342/68‑1 GCATGGGAGATTTAATAGCCTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGAGTAACCACAT > 1:28518757/1‑68 CATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT < 1:24061146/67‑1 CATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT < 1:30314957/67‑1 CATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT < 1:10464013/67‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTATAGCGACGGTGTAACCACATAT < 1:7904062/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:6136143/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:18288108/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT > 1:19349637/1‑68 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:23344894/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:8262825/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:8685107/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:29541444/68‑1 TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1111156‑1111080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT > CP009273/1111111‑1111176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |