| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 12 (0.040) | 3/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 550 total aligned reads displayed.
CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGC > CP009273/1111013‑1111146 | cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTaa > 1:25583734/1‑68 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:8685107‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:28417843‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:25052606‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:24041564‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:13631034‑M1/2‑1 (MQ=255) cccGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGAATTTGCTGTGGTAAt > 1:23868708/1‑67 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATg < 1:10464013‑M1/3‑1 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc < 1:12213240‑M1/5‑1 (MQ=255) tggttacaccgtctctttaaaacacgcacggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:4326068‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcccgctattaaatctcccATGCCgg < 1:14476605‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcccgctattaaatctcccATGCCgg < 1:17382505‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:7533571‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:28674826‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:11188215‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:2246354‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:20530773‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:20212532‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:19929164‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:19767401‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:19178101‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:3982650‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:17944223‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:16979829‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:6035920‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:6320281‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:14845175‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:7318775‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccgtcacgctagtaaatctcccATGCCgg < 1:15353539‑M1/7‑1 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:30129982/68‑1 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:5021686/68‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:2272217‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:3515632‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:32097101‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:20976174‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:2289396‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccatcacgctattaaatctcccATGCCGGAt < 1:11918599‑M1/9‑1 (MQ=255) tacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGATg > 1:13890001‑M1/58‑67 (MQ=255) cAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGcc < 1:31194867/68‑1 (MQ=255) cAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGcc < 1:30441544/68‑1 (MQ=255) cAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGcc < 1:25884485/68‑1 (MQ=255) cAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGcc < 1:8190574/68‑1 (MQ=255) aGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCa > 1:29844896/1‑68 (MQ=255) aGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCa > 1:9454041/1‑68 (MQ=255) gggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:15641744/1‑68 (MQ=255) gggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:29297209/1‑68 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:10019284/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:24460741/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:22130923/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:21643952/1‑67 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCa < 1:7837363/65‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:11601931/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:18254703/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:10861816/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:17695707/66‑1 (MQ=255) aaTCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGc < 1:11352043/68‑1 (MQ=255) aaTCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGc < 1:17793296/68‑1 (MQ=255) ccAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCAGAAGCAt > 1:13266703/1‑67 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCgg < 1:26260861/66‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCgg < 1:16743772/66‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCg < 1:8908339/65‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:27123146/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:4777975/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGAATCCGGCa > 1:16526638/1‑68 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:19425035/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:18887878/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:3800574/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:28835925/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:26495905/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:28073027/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:15929458/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:6951452/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:18351648/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:3296491/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:12546469/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:9134793/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:23391206/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:30797444/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:30631846/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:29783593/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:28275909/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAGGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:654494/68‑1 (MQ=255) cTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTaa > 1:5683629/1‑68 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGct < 1:31432404/68‑2 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:24237214/1‑68 (MQ=255) cAGGGGGATTTTCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGt < 1:5364541/68‑1 (MQ=255) gggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa < 1:24944650/67‑1 (MQ=255) gggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa < 1:2691769/67‑1 (MQ=255) ggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg > 1:21290347/1‑68 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:13031456/68‑1 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:8271985/68‑1 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:27789407/68‑1 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:27359927/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCtt < 1:20731474/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCtt < 1:9535390/68‑1 (MQ=255) atctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt < 1:3192526‑M1/60‑1 (MQ=255) atctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt < 1:1713891‑M1/60‑1 (MQ=255) ggTAATGCCGGATGCCCTTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTcgg > 1:31636779/1‑66 (MQ=255) gTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCgg > 1:8140618/1‑68 (MQ=255) gTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCgg > 1:2944706/1‑68 (MQ=255) | CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGC > CP009273/1111013‑1111146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |