New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1161581174 (0.450)12 (0.030)
+A		 6/110 NT 7.6% coding (41/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?CP009273 1162078 = 125 (0.320)coding (538/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase

GTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161517‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAA  >  CP009273/1162078‑1162112
                                                                 |                                   
GTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGA                                     >  1:19704323/1‑66
               GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCTACTGGGGTTGAAa                     >  1:1001896/1‑66
               GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGAGGGGTGTAGAAC                     >  1:8538591/1‑67
               GGGGTCACGATCACTACGCCATTGAAAAAGATAGAGATTGTCGGCGGCGGAGCGCCGGGTGTAGAAat                    >  1:15429282/1‑66
                       GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGCCGGGGGTAGAACTCTCCGCTG            >  1:25680503/1‑68
                       GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACTGGGGGAGAACTCTCAGCTG            >  1:6344504/1‑68
                           ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACTGGTGTTGAACTCTCCGCTGAAat        >  1:25503623/1‑66
                           ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAACTCTCCGCTGAATT        >  1:12966258/1‑68
                            CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGGCGGGTGTAGAACTCTCCGCTGAATT        >  1:29369090/1‑67
                             TACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAACTCTCAGCTGAATTGC      >  1:15231501/1‑68
                             TACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGGGTTGAACTCTCCGCTGAATTGC      >  1:2965247/1‑68
                                 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACTGGTGTAGAACTCTCCGCTGAATTGCACA   >  1:6612440/1‑67
                                 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAAATCTCCGCAGAATTGCCCAA  >  1:1558933/1‑68
                                                                 |                                   
GTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161517‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAA  >  CP009273/1162078‑1162112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.