| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 174 (0.450) | 12 (0.030) +A |
6/110 | NT | 7.6% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 125 (0.320) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 231 total aligned reads displayed.
GTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACAA > CP009273/1162011‑1162145 | gTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGgcggcggcg < 1:9505720/68‑1 (MQ=255)gTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGgcggcggcg < 1:15783946/68‑1 (MQ=255) ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc > 1:2889627/1‑68 (MQ=255) ccTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGa < 1:6356966/68‑1 (MQ=255) aTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtg > 1:11378147/1‑68 (MQ=255) aTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtg > 1:1400539/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:18329544/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:18190609/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:21251622/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:13141924/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:7373148/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:29074201/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:9315124/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATAGTCGGCGGCGGCGCGACGGgtgt > 1:31580034/1‑68 (MQ=255) tACTCCGCCAACCGGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGCCGGgtgt > 1:1615836/1‑68 (MQ=255) aCTCCGCCACCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:866531/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACTTTGCGATTGTCCGCGGCGGCGCGACGGGTGTa > 1:30969352/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGCCGGGTGTa > 1:12894732/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGCACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:20587225/1‑68 (MQ=255) ccGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:6628433/1‑67 (MQ=255) gggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggTGCGACGGGTGTAgaaa > 1:10015169‑M2/52‑67 (MQ=255) gggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAgaaa > 1:1558881‑M2/52‑67 (MQ=255) ggggtcacgatcactacgccattgaaaaagatagagattgtcggcggcggaGCGCCGGGTGTagaaat > 1:15429282‑M2/52‑66 (MQ=255) ccAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:30638310/1‑66 (MQ=255) ccAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:21160298/1‑66 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:11113530/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:30357104/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:8988450/1‑67 (MQ=255) tGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:28728865/1‑65 (MQ=255) gttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGCCGGGGGTAGAACTCTCCGCTg > 1:25680503‑M2/44‑68 (MQ=255) tgactactcgattgaaaaagattgcgattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGa < 1:27789761‑M2/27‑1 (MQ=255) tgactacgccattgaaaaagattgtgattgtcggcggcggTGCGGCGGGGGTAGAACTCTCAGCTGaa > 1:2733282‑M2/41‑68 (MQ=255) tgactacgccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGaa > 1:11139960‑M2/41‑68 (MQ=255) tgactacgccattgaaaaagattgagattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGa < 1:22200990‑M2/27‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:26490633/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:3390310/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:20301176/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:9794409/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:20669204/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:10727205/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:8148662/67‑1 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:12413240/1‑68 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt < 1:31366148/68‑1 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt > 1:5218452/1‑68 (MQ=255) actacgccattgaaaaagattgtgattgtcggcggcggaGCGACTGGTGTTGAACTCTCCGCtgaaat > 1:25503623‑M2/40‑66 (MQ=255) tacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGGGTTGAACTCTCCGCTGAATTGc > 1:2965247‑M2/38‑68 (MQ=255) ccattgaaaaagattgtgattgtcggcggcggTGCTCCGGGTCTAGAACTCTCCGCTGATTtgcaga > 1:4131865‑M2/33‑65 (MQ=255) ccattgaaaaagattgtgattgtcggcggcggTGCGGCGGGTGTAGAAATCTCCCCTGAAatgcagca > 1:3647050‑M2/33‑65 (MQ=255) ccattgaaaaagattgtgattgtcggcggcggGGCTACGGgt > 1:8353287‑M2/33‑42 (MQ=255) ccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGcaca > 1:4921725‑M2/33‑67 (MQ=255) ccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGcaca > 1:4400115‑M2/33‑67 (MQ=255) tGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc > 1:30124709/1‑68 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:15104456/67‑1 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:21518429/67‑1 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:6184296/67‑1 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:17528240/67‑1 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:18566212/67‑1 (MQ=255) agattgtgattgtcggcggcggGGCGACGGGTGTTGAAATCTCCGCTGAATTGCGCAACGCGGTCaa > 1:27631463‑M2/23‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:27353634/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:24150609/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:12581550/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:16755447/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:11503738/1‑67 (MQ=255) aCATTGCGATTGGCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAg < 1:29241870/68‑1 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa < 1:14414018/68‑1 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa < 1:248726/68‑1 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:29382502/1‑68 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:28611632/1‑67 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa < 1:2253180/67‑1 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt < 1:14537744/68‑1 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:25124955‑M2/53‑1 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:23426960‑M2/16‑68 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:16241601‑M2/53‑1 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:4615449‑M2/56‑1 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:26706801‑M2/56‑1 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:12323906‑M2/56‑1 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:10627696‑M2/13‑68 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:5340979‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:9448813‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:21876906‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:18986740‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:29730163‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:17420859‑M2/58‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACgg < 1:10291528‑M2/63‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACgg < 1:19557077‑M2/63‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:17933560‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:19978254‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:24053630‑M2/62‑1 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:11974899‑M2/5‑68 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:3975044‑M2/5‑68 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:651552‑M2/5‑68 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:32029066‑M2/5‑68 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:25879601‑M2/5‑68 (MQ=255) cggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:12427828‑M2/64‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:19302‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:20735288‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:25949850‑M2/65‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:1714376/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:11624150/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:20819106/67‑1 (MQ=255) | GTTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACAA > CP009273/1162011‑1162145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |