| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1182545 | NA (NA) | 4 (0.010) | 4/90 | NT | NA | noncoding (7/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1182548 | NA (NA) | noncoding (10/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 153 total aligned reads displayed.
TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1182468‑1182545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatgcggcatCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCACCT < CP009273/1182548‑1182483 TGGAAAAAGCTGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGG < 1:1650835/68‑1TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGG < 1:28958547/68‑1TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGG < 1:29174043/68‑1 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:25160347/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:5606368/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:4265938/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:6766519/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:14351121/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:23130496/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:8756726/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:9623892/1‑68 AAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGA < 1:7804457/67‑1 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:2933212/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:20693050/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:23750324/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:22320907/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:21441314/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:31142824/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:280684/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:28318788/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:29153929/1‑67 AAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAT > 1:16304822/1‑67 AAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG < 1:10686376/68‑1 AAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG < 1:28737945/68‑1 AAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG < 1:95662/68‑1 AAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG < 1:27401117/68‑1 AAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG < 1:30754819/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGG < 1:5716224/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGG < 1:19501440/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGG < 1:1389831/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGG < 1:14066612/68‑1 AGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCG > 1:5368464/1‑67 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:2083746/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:4184018/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:13621592/68‑1 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:1995764/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:27272880/1‑68 GCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC > 1:24714303/1‑68 CGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCA > 1:20778745/1‑68 CGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCA > 1:20816319/1‑68 CGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCA > 1:11122768/1‑68 CGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCA > 1:11242921/1‑68 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:4982535/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:18244505/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:9134530/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:7389424/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:30183575/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:7269562/68‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:24675108/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:4951830/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:28271339/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:22518312/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:22913491/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:7058939/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:2342763/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:29904060/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:26217176/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:13391337/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:30060212/66‑1 GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:24278042/66‑1 GGTGCAGGTGATCGCCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGC < 1:30447434/66‑1 CGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGGTGCGGGATGACATGCCGCCTCCCGTTTCGCTT > 1:20625934/1‑68 GCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTT > 1:20227572/1‑67 GGAAGTAAGCGAAAAGGGATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGGTGCGCCGTT > 1:31085055/1‑68 AGGGATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTTACTCGGCAATACG > 1:9667491/1‑68 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTATCTCGGCAATACGGAC < 1:2643422/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:26719782/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:12000252/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:12037543/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:13519885/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:17638191/67‑1 ATGCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGAC < 1:21578853/67‑1 GCGGCATCACATGCCGCCTCCCGTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGA > 1:1242529/1‑67 GCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGAT < 1:17034139/68‑1 GCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGAT < 1:7893240/68‑1 GCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGAT < 1:19197324/68‑1 GCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGAT < 1:20289788/68‑1 GCGGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGAT < 1:32024336/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:10209828/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:11524133/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:1153164/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:25012373/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:13419815/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:24304712/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:14899885/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:6136594/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:6100343/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:14980663/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:15577977/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:15927288/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:21763812/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:4899691/68‑1 GGCATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:21125548/68‑1 GGCATCACATGCCGCATCCCTTTTAGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA < 1:3230240/68‑1 CATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTTACTCGGCAAAACGGGCGATCA > 1:5072320/1‑66 CATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA > 1:3024511/1‑66 CATCACATGCCGCATCCCTTTTCGCTTACTTCCGGTGCGCCGGTACCTCCGCAATACGGACGCTCACC > 1:28538919/1‑68 ATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCACCT < 1:12823373/68‑1 ATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCACCT < 1:24875927/68‑1 ATCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCA > 1:29431698/1‑65 TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1182468‑1182545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatgcggcatCACATGCCGCATCCCTTTTCGCTTACTTCCGTTGCGCCGTTAACTCGGCAATACGGACGATCACCT < CP009273/1182548‑1182483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |