| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1182545 | NA (NA) | 4 (0.010) | 4/90 | NT | NA | noncoding (7/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1182548 | NA (NA) | noncoding (10/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 397 total aligned reads displayed.
GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGC > CP009273/1182478‑1182611 | ggTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:23283482‑M1/68‑1 (MQ=255)ggTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAT < 1:18244505‑M1/68‑1 (MQ=255) gCAGGTGATCGTCCTTCTTGACGAGTTAACTTCGCAACTGAAGTAAGCGAAAAGGGATGCGGCAtgt < 1:22537147/67‑1 (MQ=255) gCAGGTGATCGTCCGTATTGGCGAGTTTACGGCGCAACGGAAGTATGCGAATAGGGATGCGGCAtgt < 1:20771016/67‑1 (MQ=255) gCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAtgt < 1:20733208/67‑1 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:10209828‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:24304712‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:21763812‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:16872128‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgcc < 1:13419821‑M2/68‑6 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGat > 1:29431698‑M2/1‑63 (MQ=255) aTCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgc < 1:32024336‑M2/68‑8 (MQ=255) gTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTACGCGAAAAGGGATGCGGCATGTGatgccgcat < 1:30986274‑M2/67‑10 (MQ=255) gTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgcatc > 1:3042786‑M2/1‑58 (MQ=255) gTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGatgccgcat < 1:17638191‑M2/67‑10 (MQ=255) cGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCgg < 1:28327640/68‑1 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:31012109/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:14336810/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:13879896/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:30822340/68‑1 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:11194325/68‑1 (MQ=255) aTTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCtt > 1:12692214/1‑68 (MQ=255) ttGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTa > 1:20495556/1‑68 (MQ=255) tGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTCATGCCGCATCCGGCTTaa > 1:10101956/1‑68 (MQ=255) gCCGAGTTAACGGCGCAACGTAAGTAAGCGAAAAGGGAGGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:1482819/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa > 1:1534800/1‑68 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:24072801/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:11816687/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa > 1:27950979/1‑68 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:23560418/68‑1 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:31308891/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:15894882/1‑67 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:17344357/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:7404502/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa > 1:31977166/1‑66 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa > 1:22335836/1‑66 (MQ=255) ggCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATACAAACTTa > 1:18686676/1‑67 (MQ=255) ggCGCAACGGAAGTAAGCGAAAAGGGAAGCGGCAAGTGATGCCGCATCCGGCTTAAATCCAAACTTa > 1:13390685/1‑67 (MQ=255) gacgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTa > 1:16116205/3‑67 (MQ=255) gcgcAACGGAAGTAAGCGAAAAGGGATGCGGCATcacatgccgcatcccttttcgcttacttccgtt > 1:20227572‑M1/1‑34 (MQ=255) gcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAccc < 1:27244818/67‑1 (MQ=255) gcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAccc < 1:2860001/67‑1 (MQ=255) gcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAccc < 1:20167422/67‑1 (MQ=255) aaCGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTc < 1:18029381/68‑1 (MQ=255) ggAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaa > 1:3664287/1‑68 (MQ=255) ggAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTACgaa > 1:8999094/1‑68 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:5876010/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga < 1:860231/67‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga < 1:25803887/67‑1 (MQ=255) tAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc > 1:21300446/1‑68 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc < 1:23019332/67‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:29823944/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:20922354/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:19862804/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:273450/66‑1 (MQ=255) aGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCaa < 1:9783858/68‑1 (MQ=255) gCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt > 1:11667301/1‑68 (MQ=255) gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAACTCCAAACTTACCCTTCGAAGAACCAATa > 1:14910511/1‑67 (MQ=255) gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt < 1:4332176/66‑1 (MQ=255) gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATa > 1:15230525/1‑67 (MQ=255) gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAc < 1:16579470/68‑1 (MQ=255) aaaGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAccc < 1:13646287/68‑1 (MQ=255) aGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAccc > 1:31196974/1‑66 (MQ=255) aGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGc < 1:12182764/68‑1 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGCACCAATACCCGCt > 1:3766903/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:2530218/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:8337596/1‑68 (MQ=255) ggATGCGGCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacgga < 1:7254930‑M1/68‑58 (MQ=255) ggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTa > 1:6377516/1‑68 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:5305883/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:28957774/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:9095743/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:91935/66‑1 (MQ=255) gATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt < 1:9521607/66‑1 (MQ=255) aTGCGGCATcacatgccgcatcccttttcgcttacttccgttgcgccgttatctcggcaatacggac < 1:2643422‑M1/67‑59 (MQ=255) aTGCGGCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggac < 1:26719782‑M1/67‑59 (MQ=255) aTGCGGCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggac < 1:21578853‑M1/67‑59 (MQ=255) aTGCGGCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggac < 1:12037543‑M1/67‑59 (MQ=255) aTGCGGCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggac < 1:1154987‑M1/67‑59 (MQ=255) aTGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTAt < 1:29551119/67‑1 (MQ=255) aTGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCCCTAtt > 1:14571827/1‑68 (MQ=255) gCGGCATcacatgccgcctcccgtttcgcttacttccgttgcgccgttaactcggcaatacggacga > 1:1242529‑M1/1‑7 (MQ=255) gCGGCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgat < 1:19197324‑M1/68‑62 (MQ=255) gCGGCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgat < 1:7893240‑M1/68‑62 (MQ=255) gCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTg > 1:798482/1‑67 (MQ=255) gCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa < 1:29982995/68‑1 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:6761044‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:9734553‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:25012373‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:11524133‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:29359657‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:6136594‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:4899691‑M1/68‑64 (MQ=255) ggCATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca < 1:15577977‑M1/68‑64 (MQ=255) ggCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGAcc > 1:16352634/1‑68 (MQ=255) cATcacatgccgcatcccttttcgcttacttccgttgcgccgtttactcggcaaaacgggcgatca > 1:5072320‑M1/1‑3 (MQ=255) cATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca > 1:5559295‑M1/1‑3 (MQ=255) cATcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatca > 1:3024511‑M1/1‑3 (MQ=255) aTcacatgccgcatcccttttcgcttacttccgttgcgccgttaactcggcaatacggacgatcacct < 1:24875927‑M1/68‑67 (MQ=255) aTGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgc < 1:20607548/68‑1 (MQ=255) | GGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGC > CP009273/1182478‑1182611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |