New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2540715194 (0.500)16 (0.050) 5/94 NT 6.8% coding (684/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system
?CP009273 = 2540730 278 (0.860)coding (699/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system

Only 100 of 229 total aligned reads displayed.

TAACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540640‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664
                                                                                                                                               
 AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGC                                                                             >  1:8099571/1‑67
 AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGC                                                                             >  1:41604/1‑67
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:9479569/1‑68
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:9218211/1‑68
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:15914298/1‑68
  ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:6782317/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCGCATCGATCCGCGCG                                                                          >  1:25954923/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGCTCCGCGCG                                                                          >  1:10317955/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:20270011/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:20416406/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:6045522/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:5580158/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:2364974/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:21437240/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:21616402/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:6454533/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:19861782/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:5468391/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:2205177/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:2226382/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:22810455/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:23406206/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:4337235/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1904462/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:23902340/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:3843736/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:3528527/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:25383668/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:25581375/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:31693815/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:26610154/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:31182019/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:30228935/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:2790199/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:28416030/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:14455004/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1025195/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1039032/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:11223253/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:11312307/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:11912041/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:10084306/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:12075378/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:12384057/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:12655577/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13752711/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:8685310/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13955562/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:1931708/68‑1
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:14839169/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18758151/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:17916035/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:7174759/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1736024/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:7622566/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:16389766/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:16223103/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:15638440/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:15388938/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:8352575/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCCGCCCATCGATCCGCGCG                                                                          >  1:7945232/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTGTGGTCTGGCCATCGATCCGCGCG                                                                          >  1:24832094/1‑68
   CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCGTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13441266/1‑68
   CCCCGCAGCGACCACCGGTAACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:225310/68‑1
   CCCCGAAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:11047284/68‑1
    CCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:9601990/1‑67
     CCGCCGCGACCCCCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:21799608/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:19635711/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:20647661/68‑1
     CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:24257353/68‑1
      CGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:29213049/67‑1
          GCGACCCCCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCGCTCGATCCGCGCGGCAAgat                                                                   >  1:13698620/1‑65
                    GTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGAT                                                         >  1:20902030/1‑68
                                                  GTCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGGTGGATGGGCGGACC                           >  1:31937746/1‑68
                                                  GTCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGCTCGATGGGCAGACC                           >  1:2007631/1‑68
                                                  GTCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACC                           >  1:7761517/1‑68
                                                   TCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCA                          >  1:1203599/1‑68
                                                   TCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCA                          >  1:14549814/1‑68
                                                             GATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGT                >  1:26980252/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:3130642/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:15441772/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:7824106/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:17020767/1‑68
                                                                    GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:2949775/1‑68
                                                                     CGGCAATCAGCACGCCGACAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        >  1:24596981/1‑68
                                                                      GGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGG       <  1:15114981/68‑1
                                                                      GGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        >  1:7536381/1‑67
                                                                       GCAATCAGCCCGCCGATAATATTGCCGCGCGGATCGATGGGCAGACACAAGAAATCGTGAAAACCGGC      >  1:30748408/1‑68
                                                                       GCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      >  1:12124181/1‑68
                                                                        CAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      <  1:25079031/67‑1
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAATTCGTGAAAACCGGCGT    >  1:8115733/1‑68
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    >  1:25835933/1‑68
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:2889037/68‑1
                                                                         AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCG     <  1:8604219/67‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:23510307/68‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:4423101/68‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  >  1:5338337/1‑68
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:13906469/68‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:17670371/68‑1
                                                                           TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:27292166/68‑1
                                                                                                                                               
TAACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540640‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.