| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2540715 | 194 (0.500) | 16 (0.050) | 5/94 | NT | 6.8% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 278 (0.860) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
Only 100 of 394 total aligned reads displayed.
AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540649‑2540782 | aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:9396981/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:20986343/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:28732683/1‑68 (MQ=255) gCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat > 1:2818649/1‑68 (MQ=255) gCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat > 1:23873319/1‑68 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:9744623/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAtatta > 1:6557258/1‑68 (MQ=255) gACCACCGGGTACTACGCCGGTTTTCACGATTGCTTTGGGCTGCCCATCGATCCGCGCGGCAata < 1:9183275/65‑1 (MQ=255) caccGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCg > 1:27774893/1‑68 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGc < 1:27516022/67‑1 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGc < 1:28570113/67‑1 (MQ=255) actacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTg > 1:5496812/1‑68 (MQ=255) actacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTg > 1:15337717/1‑68 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:4365312‑M2/68‑2 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:22351792‑M2/68‑2 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:23510307‑M2/68‑2 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:6136696‑M2/68‑2 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa < 1:7312807‑M2/68‑2 (MQ=255) aCGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:20574159‑M2/68‑4 (MQ=255) aCGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt > 1:20162778‑M2/1‑65 (MQ=255) aCGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:16650212‑M2/68‑4 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATcagcacgccgataatattg > 1:18342088‑M1/1‑48 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattg < 1:19027933‑M2/67‑5 (MQ=255) cGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgcc > 1:2585345‑M2/1‑61 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:2949775‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:19526179‑M2/1‑60 (MQ=255) ggTTTTCACGATTGCTTTGGTCTGCCCATCGTTCCGCGCGGAAATATTATCGGCGTGCTGattgccgc > 1:3299117‑M2/1‑60 (MQ=255) ttttCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGt > 1:20476020/1‑68 (MQ=255) tttCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcg > 1:7793315‑M2/1‑57 (MQ=255) tCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg < 1:4625767/68‑1 (MQ=255) tCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg < 1:11769054/68‑1 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatc > 1:5166951‑M2/1‑53 (MQ=255) cGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg > 1:16765181/1‑65 (MQ=255) aTTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgc > 1:2560942/1‑68 (MQ=255) tttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcg < 1:21939623/68‑1 (MQ=255) ttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcg > 1:17930994/1‑67 (MQ=255) tCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcgc > 1:3035134/1‑67 (MQ=255) tCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcgc > 1:18092136/1‑67 (MQ=255) tttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCg < 1:16103656/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:5885420/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:14549814‑M2/1‑43 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:18749098/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa > 1:574377/1‑68 (MQ=255) tGGTCTGCCCACCGCCCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:21789104‑M2/1‑43 (MQ=255) tGGTCGGCCCATCGATCCGCGCGGCAATATTACCGCCGTGCGGattgccgcgcggatcgatgggcaga > 1:59569‑M2/1‑43 (MQ=255) gTCTGCCCATCGATCCGCGCGGCAATcagcacgccgataatattgccgcgcgggtggatgggcggacc > 1:31937746‑M1/1‑26 (MQ=255) gTCTGCCCATCGATCCGCGCGGCAATcagcacgccgataatattgccgcgcggctcgatgggcagacc > 1:2007631‑M1/1‑26 (MQ=255) gTCTGCCCATCGATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatggggagacc > 1:23626399‑M1/1‑26 (MQ=255) gTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAtt > 1:17814920/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAtt < 1:29284708/67‑1 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAtt < 1:30655534/67‑1 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:7133099/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:7658845/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:24350739/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:7876702/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:29953005/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:10396442/1‑68 (MQ=255) tGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGaa < 1:21322108/68‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAgg < 1:25413821/67‑1 (MQ=255) ccATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGc < 1:20113378/68‑1 (MQ=255) aTCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCAt < 1:7445574/68‑1 (MQ=255) gATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccattgaaatcgt > 1:21286355‑M1/1‑15 (MQ=255) gATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgt > 1:26980252‑M1/1‑15 (MQ=255) gATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgt > 1:193695‑M1/1‑15 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGc > 1:2283062/1‑63 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:866437/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt < 1:11287583/68‑1 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:12225493/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:20858286/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:13868175/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:14364888/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:4135206/1‑68 (MQ=255) tCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:1296532/1‑68 (MQ=255) tCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTg < 1:26535993/67‑1 (MQ=255) ccGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTgc > 1:10916018/1‑67 (MQ=255) cgcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaacc < 1:11238990‑M1/68‑60 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:15787636‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:13700231‑M1/1‑8 (MQ=255) gcgGCAATATTTTCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:30988252/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:28915076/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:10056960/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:27256795/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:8595282/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:17667105/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:13233302/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:17077994/68‑1 (MQ=255) ggCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccgg < 1:15114981‑M1/68‑63 (MQ=255) ggCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCtt > 1:29621521/1‑68 (MQ=255) cAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggc < 1:23277358‑M1/67‑64 (MQ=255) cAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggc < 1:25079031‑M1/67‑64 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaattcgtgaaaaccggcgt > 1:8115733‑M1/1‑3 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgt < 1:15471700‑M1/68‑66 (MQ=255) aaTATTATCGGCGGTCTTATTGCCGCGCGGGGCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt < 1:24818704/68‑1 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag > 1:6853786‑M1/1‑1 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:12058045‑M1/68‑68 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:12444034‑M1/68‑68 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag > 1:31358938‑M1/1‑1 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag > 1:5338337‑M1/1‑1 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:3726047‑M1/68‑68 (MQ=255) tattatCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGc < 1:17164622/68‑1 (MQ=255) | AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540649‑2540782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |