New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2590222 =	288 (0.750)	13 (0.040)	7/90	NT	5.6%	intergenic (‑126/+42)	ypfJ/purC	putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
	?	CP009273	2590249 =	207 (0.670)					intergenic (‑153/+15)	ypfJ/purC	putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase

CCGTCGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2590298‑2590222 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacggcaagaTGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCTTCGATC  >  CP009273/2590249‑2590315                                                                                                                                                  CCGTCGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGC                                                                              >  1:4979297/1‑68  CGTCGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGC                                                                              >  1:25124763/1‑67  CGTCGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGC                                                                              >  1:1444814/1‑67  CGTCGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGC                                                                              >  1:7640644/1‑67  CGTCGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGC                                                                              <  1:10087717/67‑1  CGTCGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGG                                                                               <  1:10666208/66‑1  CGTCGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGG                                                                               <  1:29512563/66‑1     CGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACG                                                                           <  1:29794029/67‑1     CGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACG                                                                           <  1:25574411/67‑1     CGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACG                                                                           <  1:13441101/67‑1     CGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACG                                                                           <  1:7227817/67‑1     CGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACG                                                                           <  1:12846513/67‑1     CGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACG                                                                           <  1:8841819/67‑1     CGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACG                                                                           <  1:8916481/67‑1     CGCCCGCCGCCTGGGTGTACAGCGGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACG                                                                           <  1:21342207/67‑1     CGCCCGCCGCCGGGGTGTACAGCTGGACGGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACG                                                                           <  1:21964340/67‑1      GCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGC                                                                         <  1:7515626/68‑1      GCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGC                                                                         <  1:24383134/68‑1      GCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGG                                                                          <  1:28199065/67‑1       CCCGCCGCCTGGGTGTACCGCTGGACTGAATTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCA                                                                        >  1:21858924/1‑68       CCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCA                                                                        >  1:18499827/1‑68        CCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCA                                                                        <  1:16032404/67‑1         CGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAG                                                                      <  1:22315289/68‑1          GCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAGA                                                                     <  1:3950385/68‑1          GCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAG                                                                      >  1:24021203/1‑67          GCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAG                                                                      >  1:4670025/1‑67          GCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAG                                                                      >  1:5307037/1‑67          GCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAG                                                                      >  1:1549043/1‑67                TGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAGATGATGA                                                               <  1:17485367/68‑1                     GTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGTTGGCACGGCAAGATGATGAACAG                                                           <  1:3899578/67‑1                     GTACAGCTGGACTGATTTTTCTGATCAGCATCTTGCCGTGCAGCGGGCACGGCAAGATGATGAACAG                                                           <  1:21627950/67‑1                          GCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAGATG                                                                   >  1:14653855/1‑54                                 TGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAGATGATGAACAGAAAAATCAGTCCA                                              <  1:13166917/68‑1                                    TTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAGATGATGAACAGAAAAATCAGTCCAGC                                            <  1:19473636/67‑1                                    TTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAGATGATGAACAGAAAAATCAGTCCAGC                                            <  1:27599032/67‑1                                    TTTTTCGGTTCATCAACTTGCCGTGCAGCTGGCACGGCAAGATGATGAACAGAAAAATCAGTCCAGCT                                           <  1:30698045/68‑1                                      ttcCTGTCCATCATCTTGCCGGGCAGCTGCCACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGT                                         <  1:29504307/65‑1                                      TTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGT                                         <  1:30894312/68‑1                                      TTTCTGATCATCAGCTTGCCGTGCAGCTGGCACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGT                                         <  1:14919033/68‑1                                      TTTCTCTTCATCATCTTGCCGTGCAGCTGCCACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGT                                         <  1:6406976/68‑1                                      TTTCTCTTCATCATCATGCCGTGCAGCTGCCACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGT                                         <  1:25002041/68‑1                                        TCTGATCATCATCTTGCCGTGCAGCTGGCACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTAC                                       <  1:10183689/68‑1                                                                   GCACGGCAAGATGATGAACAGAAAAATCAGTCCCGCTGTACACCCAGGCGGCGGGCGACGGCTTCATA            >  1:2996520/1‑68                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:7804116/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:32083552/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:31916054/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:6237852/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:26356794/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:1267397/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:12848846/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:2557571/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:23808642/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:13633527/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:20006674/68‑1                                                                     ACGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGG          <  1:13878756/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:9989862/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:8966791/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:10374833/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:10915689/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:6547995/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:6139721/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:5598153/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:22132164/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:27652495/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:28587868/68‑1                                                                      CGGCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGC         <  1:30469062/68‑1                                                                        GCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCT        >  1:6422224/1‑67                                                                        GCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCT        >  1:7293057/1‑67                                                                        GCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCT        >  1:7361487/1‑67                                                                        GCAAGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCT        >  1:3125154/1‑67                                                                           AGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCTTCGA    <  1:20733399/68‑1                                                                           AGATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCTTCGA    <  1:27958591/68‑1                                                                             ATGATGAACAGAAAGATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCTTCGATC  >  1:29781126/1‑68                                                                             ATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCTTCGATC  >  1:18790235/1‑68                                                                             ATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCTTCGATC  >  1:13238306/1‑68                                                                             ATGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCTTCGATC  >  1:11777028/1‑68                                                                                                                                                  CCGTCGCCCGCCGCCTGGGTGTACAGCTGGACTGATTTTTCTGTTCATCATCTTGCCGTGCAGCTGGCACGGCAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2590298‑2590222 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacggcaagaTGATGAACAGAAAAATCAGTCCAGCTGTACACCCAGGCGGCGGGCGACGGCTTCATAGGCTTCGATC  >  CP009273/2590249‑2590315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.