| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3202855 = | NA (NA) | 5 (0.020) | 3/94 | NT | NA | intergenic (+9/+34) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
| ? | CP009273 | 3202881 = | NA (NA) | intergenic (+35/+8) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein | |||||
GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3202930‑3202855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcaccCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGATCC > CP009273/3202881‑3202946 GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:27969607/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:31986087/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:29680391/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:29494542/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:15998169/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:17047219/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:29176166/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:28981151/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:28269294/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:30539493/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:2774146/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:26592544/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:10512123/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:20418010/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:2076849/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:24694446/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:24278987/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:24018612/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:4311487/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:10618709/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:10862059/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:9871837/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:11066724/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:9133411/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:5751100/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:4395430/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:32075032/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:12625897/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:4288105/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:4261437/68‑1GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:3484027/68‑1GTGCGGCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT < 1:12302969/68‑1 TGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT > 1:12401602/1‑67 TGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT > 1:12828286/1‑67 TGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT > 1:20342113/1‑67 TGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT > 1:9440297/1‑67 TGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT > 1:24070717/1‑67 TGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTT > 1:14969251/1‑67 CGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCG > 1:1671167/1‑68 GTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGG < 1:25628609/68‑1 GTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGG < 1:14446056/68‑1 GTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCG > 1:28930628/1‑67 GTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCG > 1:11859036/1‑67 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAACACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:20294055/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:673142/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:29928638/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:29717219/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:7114224/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:6764135/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:14798216/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:18530504/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:14385688/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:246928/1‑68 TCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC > 1:24344304/1‑68 CCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC < 1:11607016/67‑1 CCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC < 1:28360329/67‑1 CCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC < 1:15769830/67‑1 CCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGC < 1:11569562/67‑1 CGCGCTGGCCGCTGGCGTAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCAC < 1:15467270/68‑1 CGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCAC < 1:25455912/68‑1 CGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCAC < 1:2516895/68‑1 CGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCAC < 1:9828195/68‑1 CGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCAC < 1:22294430/68‑1 CGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCAC < 1:15467255/68‑1 CGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCAC < 1:6058395/68‑1 CGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCA > 1:23970730/1‑67 GCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACC < 1:2096650/68‑1 GCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACCCA < 1:22243771/68‑1 GCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACCCA < 1:6631531/68‑1 CTGGCCGCTGGCGGAGTTACCGGCTGCTTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACCCA < 1:6739167/67‑1 CGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACCCAATAGT < 1:7142612/67‑1 GTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACCCAATAGTTTTACGCAGC < 1:31067496/67‑1 GTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACCCAATAGTTTTACGCAGC < 1:28401833/67‑1 TACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACCCAATAGTTTTACGCAGCCG < 1:26016768/67‑1 TACCGGCTGCGTAAAACTATTGGGGGCCGGACAGCAATTCCCGCCACCAAATAGTTTTACGCAGCCG < 1:19477831/67‑1 CCGGCACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCCCGCTAACGCCG > 1:6174328/1‑68 CCGGCACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCG > 1:7625909/1‑68 CCGGCACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCG > 1:6906928/1‑68 CCGGCACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCG > 1:11354861/1‑68 CGGCACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGA < 1:17123998/68‑1 GGCACCCAATAGTTTTCCGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAG < 1:19793188/68‑1 GGCACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAG > 1:8045316/1‑68 GGCACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAG > 1:9895504/1‑68 GGCACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAG > 1:18452411/1‑68 ACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT > 1:30741907/1‑67 ACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT > 1:21487664/1‑67 ACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT > 1:11057720/1‑67 ACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT > 1:21417217/1‑67 ACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT > 1:11143391/1‑67 ACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT > 1:27157252/1‑67 ACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT > 1:17391614/1‑67 ACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT > 1:30215832/1‑67 ACCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT > 1:4422981/1‑67 ACCCAATAGTTTAACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGAT < 1:31109788/67‑1 CCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGATCC < 1:5498052/68‑1 CCCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGATCC < 1:3258817/68‑1 CCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGATCC > 1:31325415/1‑67 CCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGATCC > 1:3304057/1‑67 CCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGATCC > 1:13859734/1‑67 CCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGATCC > 1:12999574/1‑67 GTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAAAACTATTGGGTGCCGGAGAGCAATTTCCGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3202930‑3202855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcaccCAATAGTTTTACGCAGCCGGTAACTCCGCCAGCGGCCAGCGCGGACGCACGCTAACGCCGAGATCC > CP009273/3202881‑3202946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |