New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3487121NA (NA)5 (0.010)
+C		 5/110 NT NA noncoding (5/26 nt) REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences
?CP009273 = 3487136 NA (NA)noncoding (20/26 nt) REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences

ACACCCTGACCTCTCATTAATTGCTCATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3487089‑3487121
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGT  <  CP009273/3487136‑3487077
                                 |                                                            
ACACCCTGACCTCTCATTAATTGCTCATGCCGGCCGCGGATTGTGCCGGCCGGCAGGAGGAATTAAT                             >  1:26224260/1‑67
        ACCTCTCATTAATTGCTCATGCCGGCCGCCGATAGTGCCGTCCGGCGTGTGCAATTATTGAGAGG                       >  1:24652550/1‑65
         CCTCTCATTAATTGCTCATGCCGGCCGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGGCAG                   >  1:17916779/1‑68
           TCTCATTAATTGCTCATGCCGGCCGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGG                 >  1:26202959/1‑68
                   ATTGCTCATGCCGGCCGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTAT           >  1:24878191/1‑66
                          agGCCGGCCGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGT  >  1:9708491/3‑68
                                 |                                                            
ACACCCTGACCTCTCATTAATTGCTCATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3487089‑3487121
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGT  <  CP009273/3487136‑3487077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.