| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4061067 = | 445 (1.160) | 29 (0.090) | 12/94 | NT | 8.2% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 272 (0.840) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
Only 100 of 225 total aligned reads displayed.
GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4061142‑4061067‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCAG > CP009273/4061094‑4061160 GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT < 1:10322336/68‑1GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT < 1:25904661/68‑1GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT < 1:3001782/68‑1GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT < 1:22159335/68‑1GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT < 1:2159936/68‑1GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT < 1:19010578/68‑1GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT < 1:1704567/68‑1GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT < 1:9209093/68‑1GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT < 1:10905185/68‑1 GCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:6256591/1‑67 GCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:5361070/1‑67 GCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:18448980/1‑67 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGCGCTGCT > 1:28519254/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:1239476/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:26112459/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:27559378/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:28288161/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:22488224/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:20511590/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:20315448/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:31366953/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:19298113/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:17485868/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:11752465/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:9711313/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:7482979/1‑66 CCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCT > 1:13788349/1‑66 CTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGC < 1:30172625/67‑1 CTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGC < 1:8341859/67‑1 GCACCCCAGCGACATTGGCGGTTACACCACCCTGTTGGAGATGACGCGCAGCAAAGAGCTGCTGCTGC < 1:10592912/68‑1 GCACCACAGCGACTTTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC < 1:85821/68‑1 GCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC < 1:24177685/68‑1 GCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC < 1:23861468/68‑1 GCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC < 1:30633168/68‑1 GCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC < 1:27485842/68‑1 CACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:31992151/1‑67 CACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:27749440/1‑67 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGC < 1:12911850/68‑1 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:22678572/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:2458208/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:101825/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:13927881/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:3023082/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:20228363/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:19918395/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:16148689/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:973477/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:1876221/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:32038815/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:3527297/1‑66 ACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:3388044/1‑66 CCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:20004426/1‑65 CCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGC > 1:12529227/1‑65 GACATTGGGGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCAT < 1:28745700/65‑1 GACATTGGCGGTTACACCACCGTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCAT < 1:6625216/65‑1 GACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCAT < 1:974049/65‑1 GACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCAT < 1:10358036/65‑1 GACATTGGCGGTTACACCACCCTGTGTGAGATGAAGCGCACCAAAGAGCTGCTGCTGCGCTTCATCT < 1:8490190/67‑1 GACATTGGCGGTAACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCAT < 1:5239751/65‑1 CATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCATCTCAA > 1:26033691/1‑68 CATTGGCGGTTACACCACCCTGCTTGAGAAGACGCGCAGCCACGAGCTGCTGCTGCGCTTCATCTCAA < 1:11178240/68‑1 CGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCATCTCAAACAGG < 1:25997092/67‑1 CGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCATCTCAAACAGG < 1:22116529/67‑1 CGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCATCTCAAACAGG < 1:4252021/67‑1 CGGTTACACCACCCTGTTTGAGATGAAGCCCAGCAAAGAGCTGCTGCTGCGCTTCGTCTCAAACAGG < 1:16646477/67‑1 TTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCATCTCAAACAGGGTG < 1:18374854/67‑1 TTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCATCTCAAACAGGGTG < 1:30937755/67‑1 TACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCTTCATCTCAAACAGGGTGG < 1:21041100/67‑1 CCTGATTGAGACGAAGCCCAGCAAAGAGCTGCTGCTGCGCTTCATCCCAAACAGGGTGGTGTAACCGC < 1:28907186/68‑1 tcAAGCGCACCAAAGAGCTGCTGCGGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCT < 1:4700598/65‑1 cAAGCGCAGCAAAGCGCTGCTGCTGCGCTTCATCTAAAACAGGGTGGTGTAACCGCCAATGTCGCTGT < 1:7651177/67‑1 AAGCCCACCAAACAGCTGCTGCTGCGCTTCATCTCAAACAGGGTGGTGAAACCGCCAATGTCGCTGT < 1:24433006/67‑1 GCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCA > 1:26913771/1‑68 GCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCA > 1:15927620/1‑68 GCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCA > 1:14433110/1‑68 GCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCA > 1:19391064/1‑68 GCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCA > 1:13812203/1‑68 GCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCA < 1:25353149/68‑1 CTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCAT > 1:29654127/1‑68 GCTTCATCTCAAACTGGGGGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGC < 1:2418723/67‑1 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCC > 1:8112932/1‑68 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCC > 1:2226535/1‑68 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCC > 1:11230975/1‑68 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCC > 1:6223771/1‑68 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCC > 1:15650155/1‑68 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCC > 1:15164681/1‑68 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCC > 1:7115926/1‑68 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCC > 1:1477840/1‑68 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGC < 1:3818643/67‑1 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGC < 1:7949509/67‑1 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGC < 1:4929524/67‑1 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGC < 1:18624870/67‑1 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGC < 1:21480165/67‑1 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGC < 1:27937894/67‑1 GCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGC < 1:2739852/67‑1 GCTTCATCTCAAACAGGGGGGTGAAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGC < 1:12141946/67‑1 TTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCA > 1:558395/1‑67 TTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCA < 1:19676733/67‑1 TTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCA > 1:29380114/1‑67 TTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCA > 1:25309429/1‑67 GGCCTGCACCACAGCGACATTGGCGGTTACACCACCCTGTTTGAGATGAAGCGCAGCAAAGAGCTGCTGCTGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4061142‑4061067‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCAG > CP009273/4061094‑4061160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |