| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4061067 = | 445 (1.160) | 29 (0.090) | 12/94 | NT | 8.2% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 272 (0.840) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
Only 100 of 598 total aligned reads displayed.
CAGTTGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGT > CP009273/4061000‑4061132 | ctggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaa < 1:9131624‑M1/1‑1 (MQ=255) ggcaatgagcggacatggcctgcacctcagcgacattggcggttacaccaccctgtttgagatgaAgc > 1:22555953‑M1/66‑68 (MQ=255) ggcaatgaccggacgtggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc > 1:30442328‑M1/66‑68 (MQ=255) ggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc > 1:15650155‑M1/66‑68 (MQ=255) ggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc > 1:6223771‑M1/66‑68 (MQ=255) gcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc < 1:2739852‑M1/3‑1 (MQ=255) gcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc < 1:32066893‑M1/3‑1 (MQ=255) tGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAgc < 1:21140083/66‑1 (MQ=255) tGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAgc < 1:18572116/66‑1 (MQ=255) tGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAgc < 1:6388653/66‑1 (MQ=255) aatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgca > 1:24463395‑M1/63‑68 (MQ=255) atgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcag > 1:28032786‑M1/62‑68 (MQ=255) atgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcag > 1:27739549‑M1/62‑68 (MQ=255) tgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:8064088‑M1/61‑68 (MQ=255) tgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:20651921‑M1/61‑68 (MQ=255) tgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:19391064‑M1/61‑68 (MQ=255) gCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagca < 1:29153612/68‑1 (MQ=255) gCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagca < 1:18992622/68‑1 (MQ=255) gCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagca < 1:18081385/68‑1 (MQ=255) ccAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagca > 1:4380716/1‑67 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc < 1:9544248/67‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc < 1:22873543/67‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc > 1:17551759/1‑67 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc > 1:16356756/1‑67 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc < 1:5644962/67‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc > 1:11630372/1‑67 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc < 1:14297573/67‑1 (MQ=255) ggTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGctct < 1:28779847/68‑1 (MQ=255) aCCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCttt > 1:26635083/1‑66 (MQ=255) ccTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgct < 1:29621180/68‑1 (MQ=255) cTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgct > 1:10735680/1‑67 (MQ=255) cTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgct > 1:23749559/1‑67 (MQ=255) ttCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgctgc > 1:3363778/1‑68 (MQ=255) tCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgctgc > 1:20228832/1‑67 (MQ=255) tCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgctgc > 1:13076921/1‑67 (MQ=255) cGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTgcgc < 1:14589741/68‑1 (MQ=255) tGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCt > 1:1503846/1‑67 (MQ=255) gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:3185288/1‑68 (MQ=255) gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:7680625/1‑68 (MQ=255) ggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:6589618/1‑68 (MQ=255) agcgacattggcggttacaccaccctgtttgagatgaAGCGCCGCAGCAGCTCTTTGGTGCgcttga < 1:4700598‑M1/30‑3 (MQ=255) agcgacattggcggttacaccaccctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:20379955‑M1/31‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:14840867/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:25335952/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:10942805/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:15218195/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:4916510/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:19935502/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:29346274/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:13190187/67‑1 (MQ=255) gcgcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAtc < 1:254715/67‑1 (MQ=255) gcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCa < 1:11374876/68‑1 (MQ=255) gcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCa < 1:875604/68‑1 (MQ=255) gcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCa < 1:22358717/68‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:4212848/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:25078206/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:24843409/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:17114569/67‑1 (MQ=255) tcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAAc > 1:17320684/1‑68 (MQ=255) tcGGCGTGAAGGCTCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg > 1:1412144/1‑68 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCTCCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:23215396/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:6778253/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:10001445/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:7941940/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:8352071/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:29753444/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg > 1:26226736/1‑68 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:30198400/68‑1 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:26932884/1‑68 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt < 1:13639469/68‑1 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:21643025/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGGTTCATCTCCAACAGggtgg > 1:7000851/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg > 1:31430025/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg > 1:7274543/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg > 1:3714023/1‑68 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg < 1:24186669/67‑1 (MQ=255) gAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGgtgt < 1:25730220/68‑1 (MQ=255) caccctgtttgagatgaAGCGCAGCCGCAGCTGTTTGCTGCGCGTCCTCTCAAACAGGGtggtgtta < 1:12461718‑M1/50‑3 (MQ=255) caccctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa < 1:30937755‑M1/50‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:18350922/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:12649141/67‑1 (MQ=255) cctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:5415899‑M1/53‑1 (MQ=255) cctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:22116529‑M1/53‑1 (MQ=255) cctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:25997092‑M1/53‑1 (MQ=255) aaaTCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAAt > 1:1598935/1‑68 (MQ=255) aaTCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAAt < 1:2244589/67‑1 (MQ=255) aaTCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATg < 1:11025586/68‑1 (MQ=255) tCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:28508871/68‑1 (MQ=255) tCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGGGGTGTAACCGCCAATGTc < 1:31739816/68‑1 (MQ=255) agatgaAGCGCAGCAGCAGCTCTTTGGTGCGCTTCATCTCACACAGGGTGGTGTAACCGCCAATGTc < 1:8490190‑M1/61‑1 (MQ=255) cACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc > 1:12089034/1‑65 (MQ=255) cACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc > 1:17809173/1‑65 (MQ=255) atgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTTACCGCCAATGTc < 1:5239751‑M1/61‑1 (MQ=255) atgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:10358036‑M1/61‑1 (MQ=255) aCCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCt < 1:13849450/67‑1 (MQ=255) aCCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCt < 1:28997993/67‑1 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:5905816/68‑1 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:16838245/68‑1 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt > 1:19743413/1‑68 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:29958197/68‑1 (MQ=255) | CAGTTGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGT > CP009273/4061000‑4061132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |