| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4230085 = | NA (NA) | 6 (0.020) | 5/98 | NT | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4230118 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4230158‑4230085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA > CP009273/4230118‑4230184 TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCA < 1:6652602/68‑1TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCA < 1:11315159/68‑1TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCA < 1:4661681/68‑1TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCA < 1:17733440/68‑1 GGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT < 1:10917492/68‑1 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:9553116/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:10850889/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:5906616/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:5256928/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:31891449/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:29145177/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:23932362/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:21228422/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:19003209/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:15947169/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:14499783/1‑67 GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT > 1:11430799/1‑67 cGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:13050004/2‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:15710843/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:11587346/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:26410888/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:31998481/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:25114956/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:24574347/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:23191922/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:4652531/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:22255239/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:20439126/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:11229638/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:7093186/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:19293728/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:18289536/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:9359008/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:16494394/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:74624/1‑68 AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCCCATCC > 1:5892237/1‑68 AGCGCGCCTCCACCAAAGCAGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC > 1:5892222/1‑68 GCGCGCCGCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG < 1:29466957/68‑1 GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC < 1:728988/68‑1 GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG < 1:12279246/66‑1 GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG < 1:28693782/66‑1 GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG < 1:8060064/66‑1 GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG < 1:5481693/66‑1 GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG < 1:11333550/66‑1 GCGCCTCCACCAAAGCCGGAAATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC < 1:31895489/68‑1 GCGCCACCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG < 1:31134311/66‑1 CCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGG < 1:15929594/68‑1 CACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGG < 1:4153910/68‑1 CAAAGCCGGATATACCTCCCTGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAG < 1:26063924/68‑1 TATCCCTACCCGCAGGCCGGATAACCCCCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGG < 1:22425083/68‑1 TACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGGCT < 1:19726229/68‑1 TACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT < 1:11176605/41‑1 GCGGCGTATCCGGCCTACGGGTAGGGATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGA < 1:6809849/67‑1 ATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACA < 1:12012306/68‑1 TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT > 1:12462606/1‑68 TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT > 1:21333944/1‑68 TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT > 1:9001119/1‑68 TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT > 1:4555071/1‑68 CCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT > 1:7297639/1‑67 CCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT > 1:20181385/1‑67 CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC > 1:16364133/1‑68 CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC > 1:19399545/1‑68 CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC > 1:11496747/1‑68 CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC > 1:15903881/1‑68 CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC > 1:27222039/1‑68 CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC > 1:27959900/1‑68 CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC > 1:665941/1‑68 CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC > 1:30707978/1‑68 GGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACA < 1:15181804/68‑1 GGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACA < 1:25989050/68‑1 GCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACAC > 1:16512500/1‑68 GCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACAC > 1:31982858/1‑68 CCTACGGGTATGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACAC < 1:26475317/67‑1 CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA > 1:19923799/1‑68 CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA > 1:20214544/1‑68 CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA > 1:20260454/1‑68 CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA > 1:22903802/1‑68 CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA > 1:24789657/1‑68 CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA > 1:14859837/1‑68 CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA > 1:30864056/1‑68 TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4230158‑4230085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA > CP009273/4230118‑4230184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |