| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4328027 = | 250 (0.650) | 22 (0.070) | 9/96 | NT | 8.1% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 284 (0.860) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
Only 100 of 415 total aligned reads displayed.
TATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327960‑4328094 | tATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcg > 1:26908875/1‑68 (MQ=255)gggactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag < 1:10117591‑M1/1‑1 (MQ=255) ggactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag < 1:26147446‑M1/1‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATTCTCAAAAGGCCTAAGGCCAggcggc < 1:5315435/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:10872840/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:5626138/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:9491870/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:7611711/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:25970188/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTCGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:3831229/68‑1 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:27890996‑M1/66‑66 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:1051292‑M1/66‑66 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:27705876‑M1/66‑66 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc < 1:13006774‑M1/3‑1 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc < 1:25163806‑M1/3‑1 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:5233956‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:8853764‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:23501747‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:12661261‑M1/65‑67 (MQ=255) ctgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGCGt > 1:12198869‑M1/64‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:24071589/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:10965954/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:8784438/1‑68 (MQ=255) aTTTTACTTTGAAGCAATTTTTATGAAAAAGTTGCCAAACACAAAAGGCCTAAGGCCAGGCGCCGTaa > 1:2913375/1‑68 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCATAAGGCCTAAGGCCAGGCGGCGTAAt < 1:21648831/68‑1 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:15643606/68‑1 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:32061540/68‑1 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:17781233/68‑1 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:21439015/68‑1 (MQ=255) ttgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGtt > 1:25541196/1‑68 (MQ=255) ttgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGtt > 1:28581640/1‑68 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa < 1:29539474/68‑1 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa < 1:2063059/68‑1 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa > 1:20371624/1‑68 (MQ=255) gtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTAt > 1:25679251/1‑68 (MQ=255) aaTTTTTATGAAAACGTTGCCATACTCAACAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACaa < 1:30469063/67‑1 (MQ=255) aaTTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACaa < 1:9218070/67‑1 (MQ=255) aaTTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACa < 1:11324840/66‑1 (MQ=255) aaTTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACa < 1:30085064/66‑1 (MQ=255) ttttATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTAc > 1:28872595/1‑68 (MQ=255) aaaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCa < 1:1861849/67‑1 (MQ=255) aaaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCa < 1:15299636/67‑1 (MQ=255) aaaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCa < 1:6076184/67‑1 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:31441497/68‑1 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:17622495/68‑1 (MQ=255) cGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCgg > 1:19277330/1‑68 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:18507732/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:26308388/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:16798963/68‑1 (MQ=255) cATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGt < 1:13369761/68‑1 (MQ=255) aTACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTg > 1:15915912/1‑68 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:746507/1‑68 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:4741276/1‑68 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:14386942/1‑68 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:14761269/1‑68 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAGTAGTGGtt > 1:23278051/1‑67 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:207636/1‑66 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGc < 1:4398881/68‑1 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:8362145/1‑67 (MQ=255) ggCCAAAGGCCAGGCGGCGTAATGTTTTTTAAACAAATACGCCTTCAGCCGAATAGTGGTTACGCtt > 1:27578130/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCttt < 1:6771494/66‑1 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:7807856/1‑67 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa < 1:13972338/67‑1 (MQ=255) tAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACg < 1:22797779/68‑1 (MQ=255) tccgctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGc < 1:20945710‑M1/58‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:30169930/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:31643899/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:696706/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:6411450/68‑1 (MQ=255) ggCCAGGCGGGGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:23661256/1‑68 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:7191004/1‑68 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:9035416/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGTTTACGCTTTCACGcaca > 1:21952600/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:27232735/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:11730416/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:12563310/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:12755744/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:13554347/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:189202/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:19094984/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:2020502/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:31045470/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:24578575/1‑68 (MQ=255) gctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:3039181‑M1/62‑1 (MQ=255) tgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:22331600‑M1/63‑1 (MQ=255) tgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:22643249‑M1/63‑1 (MQ=255) tgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:10363989‑M1/63‑1 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:1023974/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:28363046/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:15085642/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc < 1:2420953/66‑1 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc < 1:21790380/66‑1 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:23958972/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:21093292/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:12325809/1‑68 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:4911790‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:3382641‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:12003452‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTg < 1:16282037‑M1/68‑1 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTg < 1:11938895‑M1/68‑1 (MQ=255) | TATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327960‑4328094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |