New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4512275 =363 (0.940)27 (0.090) 10/92 NT 7.6% coding (1637/1968 nt) yjhG putative dehydratase
?CP009273 4512318 = 354 (1.120)coding (1594/1968 nt) yjhG putative dehydratase

Only 100 of 612 total aligned reads displayed.

TTCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTA  >  CP009273/4512208‑4512342
                                                                   |                                                                   
ttCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGc                                                                     <  1:13979622/68‑1 (MQ=255)
ttCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGc                                                                     <  1:28314844/68‑1 (MQ=255)
 aagaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc                                                                    <  1:19673623‑M1/2‑1 (MQ=255)
  agaaacctaccaggttaccagtgccctgatgcatctgtcatccggtaagcatgtttcgttaatcaCCg                                                                   <  1:4190640‑M1/3‑1 (MQ=255)
  agaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc                                                                    >  1:16872124‑M1/66‑67 (MQ=255)
       cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc                                                               <  1:29024172‑M1/7‑1 (MQ=255)
       cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc                                                               <  1:10495381‑M1/7‑1 (MQ=255)
         aTCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAc                                                             >  1:4601519/1‑67 (MQ=255)
         aTCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAc                                                             >  1:3553909/1‑67 (MQ=255)
         aTCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAc                                                             >  1:22330486/1‑67 (MQ=255)
          tCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgc                                                           >  1:30704374/1‑68 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:24304300/68‑1 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:13442325/68‑1 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:5967770/68‑1 (MQ=255)
             ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc                                                        <  1:14479800/68‑1 (MQ=255)
             ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc                                                        <  1:6290441/68‑1 (MQ=255)
              cGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCa                                                       <  1:9487955/68‑1 (MQ=255)
              cGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCa                                                       <  1:5274078/68‑1 (MQ=255)
               ggTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAg                                                      >  1:4843787/1‑68 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:17726574/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:31386395/1‑67 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCCCGCGCCAGTAGCACCGc                                             >  1:5552531/1‑67 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:26588861/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:4343503/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:11817352/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:18882592/68‑1 (MQ=255)
                           aCCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCg                                          >  1:23860514/1‑68 (MQ=255)
                            ccGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCga                                         >  1:28552833/1‑68 (MQ=255)
                            ccGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCga                                         >  1:19419316/1‑68 (MQ=255)
                              gATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCgaga                                       >  1:14309624/1‑68 (MQ=255)
                               agcatctgtcatacggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGaa                                      <  1:14829571‑M1/32‑1 (MQ=255)
                                tGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGaaa                                     <  1:17447995/68‑1 (MQ=255)
                                  gggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACg                                   >  1:19006481/1‑68 (MQ=255)
                                   ggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt                                  >  1:31721960/1‑68 (MQ=255)
                                   ggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt                                  >  1:3802321/1‑68 (MQ=255)
                                    gCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt                                  <  1:6810563/67‑1 (MQ=255)
                                    gCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt                                  <  1:7814058/67‑1 (MQ=255)
                                     ccTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTg                                 <  1:8759991/67‑1 (MQ=255)
                                     ccTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGc                                >  1:15747059/1‑68 (MQ=255)
                                     ccTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGc                                >  1:21924063/1‑68 (MQ=255)
                                      cTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCa                               >  1:29764051/1‑68 (MQ=255)
                                        ccGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATc                             <  1:3304630/68‑1 (MQ=255)
                                          tacggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCgg                           <  1:27784470‑M1/43‑1 (MQ=255)
                                          ggCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAACCGCCCGAGAAACGTGCATCgg                           >  1:20349159/1‑68 (MQ=255)
                                          ggCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAGACGTGCATCgg                           >  1:30005148/1‑68 (MQ=255)
                                            ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt                          <  1:21466187/67‑1 (MQ=255)
                                            ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt                          <  1:27146775/67‑1 (MQ=255)
                                             ggtaagcatgtttcgttaatcaCCGCTGCACGCGCCAGTAGAAACGCCCGAGCAACGTGCATCGGTGa                        <  1:10024356‑M1/46‑1 (MQ=255)
                                             ggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa                        <  1:20704102‑M1/46‑1 (MQ=255)
                                             ggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa                        <  1:15401615‑M1/46‑1 (MQ=255)
                                             cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa                        <  1:18633560/68‑1 (MQ=255)
                                             cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa                        <  1:21128938/68‑1 (MQ=255)
                                             cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa                        <  1:26219589/68‑1 (MQ=255)
                                              aGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGAt                       >  1:11500730/1‑68 (MQ=255)
                                                 gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTaa                    <  1:25062843/68‑1 (MQ=255)
                                                 gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTaa                    <  1:8564364/68‑1 (MQ=255)
                                                 gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTa                     >  1:12391261/1‑67 (MQ=255)
                                                   catgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACg                  <  1:23336992‑M1/52‑1 (MQ=255)
                                                    tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa                 <  1:12746527/68‑1 (MQ=255)
                                                     tgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGaa                <  1:2601902‑M1/54‑1 (MQ=255)
                                                      tGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGaa                >  1:25534592/1‑67 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:11273129/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:24912745/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:24618432/1‑68 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:11036411/1‑68 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:6599166/1‑68 (MQ=255)
                                                         ccccACATGGCCGACGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:20873873/67‑1 (MQ=255)
                                                          cccAGATGCCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGATACATg           <  1:12065791/68‑1 (MQ=37)
                                                             acaTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt        <  1:5867069/68‑1 (MQ=255)
                                                              caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt        >  1:22718646/1‑67 (MQ=255)
                                                              caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt        >  1:4064229/1‑67 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:15196016/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:15555860/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:7228154/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:10697790/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:16560286/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:9244917/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:7379731/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:17861422/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:15042463/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:17988000/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:25341537/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:27400396/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:22041267/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:31076032/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:19879780/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:14598380/68‑1 (MQ=255)
                                                                ccaCCGATGCACGCCCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     >  1:9038311‑M1/4‑68 (MQ=255)
                                                                 ggCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCg    <  1:16137703/68‑1 (MQ=255)
                                                                 ggCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCg    <  1:10211466/68‑1 (MQ=255)
                                                                 ggCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCg    >  1:13076322/1‑68 (MQ=255)
                                                                  gCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:8046279/1‑68 (MQ=255)
                                                                  gCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:2567377/1‑68 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTTCATCGGTGATTAACGAAACATGCTTACCGt   >  1:30392971‑M1/1‑67 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:29453799‑M1/1‑67 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:26936216‑M1/1‑67 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa  <  1:23587514‑M1/68‑1 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa  <  1:8316116‑M1/68‑1 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa  <  1:23229460‑M1/68‑1 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa  <  1:18468094‑M1/68‑1 (MQ=255)
                                                                   |                                                                   
TTCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTA  >  CP009273/4512208‑4512342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.