New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 248296 =83 (0.220)10 (0.030) 5/96 NT 12.0% coding (912/1056 nt) dinB DNA polymerase IV
?CP009273 248360 = 76 (0.230)coding (976/1056 nt) dinB DNA polymerase IV

Only 100 of 118 total aligned reads displayed.

TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGG  >  CP009273/248229‑248362
                                                                   |                                                                  
tGATTGCTCGCCAGGGTGTGAAATTAAAGTTCGACTATTATCAGCAAACCACACAGGAGCACGTCTgg                                                                    <  1:21193238/68‑1 (MQ=255)
tGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTGCAGCAAACCACCCAGGAGCACGTCTgg                                                                    <  1:21635768/68‑1 (MQ=255)
  aTTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGcc                                                                  >  1:31962794/1‑68 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg                                                               <  1:4026294‑M1/6‑1 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaacgcgcccgccgc                                                                <  1:13564178‑M1/5‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCGTGGAGCACGTCTGGCcgcg                                                               >  1:21896657/1‑68 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:28368191/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               >  1:10849205/1‑68 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:8917017/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:12929687/68‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:21853255‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:18170760‑M1/8‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGc                                                             <  1:14796690/68‑1 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:9877549/1‑68 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:26287570/1‑68 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:2354903/1‑68 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:1745988/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:28009919/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:15496508/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:29090166/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:9451058/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:14794355/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:642545/67‑1 (MQ=255)
            aGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAAt                                                        >  1:17128751/1‑68 (MQ=255)
             gggggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATa                                                       >  1:6979604/1‑68 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:28049880/67‑1 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:20172375/67‑1 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:8485245/67‑1 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:32111611/67‑1 (MQ=255)
                  tGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGc                                                   <  1:18325985/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:20767614/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:14415963/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:29929405/67‑1 (MQ=255)
                      aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                >  1:31532777/1‑66 (MQ=255)
                      aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                >  1:2030677/1‑66 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                             <  1:17509269/68‑1 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                             <  1:11282767/68‑1 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                             <  1:16455545/68‑1 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATc                                              >  1:10603262/1‑63 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:9048087/1‑68 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:30860219/1‑68 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:26991889/1‑68 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         <  1:26055523/68‑1 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:2263095/1‑68 (MQ=255)
                            gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCGGATCTAATc                                         >  1:5860507/1‑67 (MQ=255)
                                     ttttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc                               <  1:740969/68‑1 (MQ=255)
                                     atgcagccccaccagacgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc                               <  1:15760134‑M1/38‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                              <  1:15995816/68‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                              <  1:24410304/68‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                              <  1:6218918/68‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                              <  1:26359812/68‑1 (MQ=255)
                                       ttCAGCAAACCACCCAGGAGCACGTGTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGt                             <  1:23606012/68‑1 (MQ=255)
                                       gcagccccaccagacgcacaccgcgcccGCCGCGGCGGAATAAAGCGGATCTAATCGCCAccgcgcgg                             <  1:28913608‑M1/40‑2 (MQ=255)
                                       gcagccccaccagacgcacaccgcgcccGCCGCGGCGGAATAAAGCGGAGCGAGTCGCCCccgcgcgg                             <  1:12117130‑M1/40‑2 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:14184690/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:5503381/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:8431458/1‑67 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:8573491/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:22045497/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:4076922/66‑1 (MQ=255)
                                                ccaccCAGGTGCACGTCTGGCCGCGGCGGAATAAATCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:30308394/68‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:12101948/68‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:2929519/68‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:30824720/68‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:11963483/68‑1 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:10319947/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:11360784/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:2491284/1‑68 (MQ=255)
                                                       cacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACGTGGGAtgacc             <  1:12319134‑M1/56‑3 (MQ=255)
                                                       cacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACGGGGGTTGAAc             <  1:32124432‑M1/56‑1 (MQ=255)
                                                       cacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             <  1:20660107‑M1/56‑1 (MQ=255)
                                                         atcACGTCTGTCCGAGGCTTAATAAAGCTGATCTTATAGCCAACGCGCGTAAAACATGGGATGAAc             <  1:11207336/64‑1 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAGCCTGGGATGAAcg            >  1:15356254/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:17626184/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:18629713/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:8582656/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:24549063/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:24816347/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:28104317/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:3741617/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:14980537/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCAAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:8453682/1‑67 (MQ=255)
                                                          accgcgcccGCCGCGGCTGAATAAAGCTGCTCTACTCGCCACCGCGCGTAAAACCTGGGATGAAcgcc          <  1:8511778‑M1/59‑1 (MQ=255)
                                                          accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGCAcgcc          <  1:18200498‑M1/59‑1 (MQ=255)
                                                            aCGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgccgc        >  1:9589880/1‑68 (MQ=255)
                                                             cGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCcgcg       <  1:18168753/68‑1 (MQ=255)
                                                              ggcTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcgg      <  1:31454911/66‑1 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCcgcg       >  1:6287053/1‑67 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCcgcg       >  1:23744403/1‑67 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcgg      <  1:16621117/68‑1 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcggc     >  1:1596270/1‑68 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcggc     >  1:19480345/1‑68 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcggc     >  1:30919391/1‑68 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcggc     >  1:5314501/1‑68 (MQ=255)
                                                                cccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCcgcggcc    <  1:31602012‑M1/65‑2 (MQ=255)
                                                                cccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcggcg    <  1:23406278‑M1/65‑1 (MQ=255)
                                                                cccGCCGCGGCTGAATAAAGCTGATATAATCGCCACCGCGCGTAAAACCTCGGATGAAACCCgcggcg    <  1:14860919‑M1/65‑1 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg  <  1:28483087/68‑1 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg  <  1:2934489/68‑1 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg  <  1:30813029/68‑1 (MQ=255)
                                                                   |                                                                  
TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGG  >  CP009273/248229‑248362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.