New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 248296 =83 (0.220)10 (0.030) 5/96 NT 12.0% coding (912/1056 nt) dinB DNA polymerase IV
?CP009273 248360 = 76 (0.230)coding (976/1056 nt) dinB DNA polymerase IV

Only 100 of 145 total aligned reads displayed.

GGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGT  >  CP009273/248295‑248427
                                                                 |                                                                   
gtCCGGGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg                                                                   >  1:29748291‑M1/3‑68 (MQ=255)
ggccgcggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcggg                                                                   <  1:31602012‑M2/3‑1 (MQ=255)
ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg                                                                   <  1:2934489/68‑1 (MQ=255)
ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg                                                                   <  1:28483087/68‑1 (MQ=255)
cgccgcgggtttcatccgaggttttacgcgcggtggcgattatatcagctttattcagccgcggcggg                                                                   <  1:14860919‑M2/3‑1 (MQ=255)
cgccgcggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcggg                                                                   <  1:23406278‑M2/3‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:15828197‑M1/67‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:6230451‑M1/67‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:3570892‑M1/67‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:26433759‑M1/67‑1 (MQ=255)
    GCGGCGGAATAAAGCTGATCTCATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGcgcg                                                               >  1:5246335‑M1/1‑68 (MQ=255)
      ggcgtgcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGgt                                                             <  1:18200498‑M2/9‑1 (MQ=255)
      GGCTGAATCAAGCTGATCTAATCGCCACCGCGCGTAAAACCCGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:14804561‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCgg                                                              >  1:5761482‑M1/1‑67 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:2174079‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:27039681‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:3524539‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:23343056‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:19547014‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:18235447‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:16719698‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:27185528‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:31356838‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:17273887‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:27294216‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:28107255‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:28083231‑M1/1‑68 (MQ=255)
      GGCTGAAGAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:7408729‑M1/1‑68 (MQ=255)
      GGCGGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:12499875‑M1/1‑68 (MQ=255)
        CTGGATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgtgt                                                           <  1:23127796‑M1/68‑1 (MQ=255)
         tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg                                                          <  1:18462678/68‑1 (MQ=255)
         tGAATAAAGCTGAGCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg                                                          <  1:5478024/68‑1 (MQ=255)
         gttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGGtgtg                                                          <  1:20660107‑M2/12‑1 (MQ=255)
         gttcaacccccgttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGGtgtg                                                          <  1:32124432‑M2/12‑1 (MQ=255)
         ggtcatcccacgttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGGtgtg                                                          <  1:12319134‑M2/12‑1 (MQ=255)
           tcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGGTGTGCg                                                        <  1:28582240‑M2/14‑1 (MQ=255)
            aTAAAGCTGATCTAATCGCCCCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        <  1:15287652/67‑1 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAACCCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        >  1:783573/1‑67 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        <  1:6886856/67‑1 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        <  1:1288796/67‑1 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        <  1:18032231/67‑1 (MQ=255)
               aaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg                                                    <  1:7340230/68‑1 (MQ=255)
               aaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg                                                    <  1:2173665/68‑1 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:32004077/1‑68 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:16349908/1‑68 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:25347912/1‑68 (MQ=255)
                    gATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               <  1:26159957/68‑1 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg                                              <  1:18906545/67‑1 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg                                              <  1:15112344/67‑1 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg                                              <  1:29326630/67‑1 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               >  1:21996298/1‑66 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               >  1:30872474/1‑66 (MQ=255)
                         ccgcgcggtggcgattagatccgctttattccgccgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:28913608‑M2/28‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:28208048/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:30034633/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:9318945/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:9145811/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:5924320/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:14642042/68‑1 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        <  1:23560943/68‑1 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        <  1:8833159/68‑1 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        >  1:15038727/1‑68 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        >  1:32039661/1‑68 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGCGTGCGTCTGGTGGGGCTGCAt                                        <  1:21457402/68‑1 (MQ=255)
                           tCGCCACCGCGCGGAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        >  1:30025093/1‑68 (MQ=255)
                             gCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgt                                      >  1:15281147/1‑68 (MQ=255)
                             gCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgt                                      >  1:11949229/1‑68 (MQ=255)
                              ccACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgtg                                     >  1:12803194/1‑68 (MQ=255)
                              acACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgtg                                     >  1:27139361/2‑68 (MQ=255)
                               cACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGa                                    <  1:11864483/68‑1 (MQ=255)
                                aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   >  1:661224/1‑68 (MQ=255)
                                aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   <  1:2522498/68‑1 (MQ=255)
                                aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   >  1:13961388/1‑68 (MQ=255)
                                aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   >  1:1986055/1‑68 (MQ=255)
                                  cgcgcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGt                                 >  1:10925368/1‑68 (MQ=255)
                                     gcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTg                               <  1:745926/67‑1 (MQ=255)
                                     gcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTg                               <  1:26051532/67‑1 (MQ=255)
                                           atccTGGGATGAACGCCGCGGCGTGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAcc                        <  1:18934096/66‑1 (MQ=255)
                                           aaCCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAcc                        <  1:10302610/68‑1 (MQ=255)
                                           aaCCGGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAcc                        <  1:20253080/68‑1 (MQ=255)
                                            aCCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc                       <  1:4245663/68‑1 (MQ=255)
                                             ccTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc                       >  1:12619628/1‑67 (MQ=255)
                                             ccTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc                       >  1:3177109/1‑67 (MQ=255)
                                               tGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCa                    <  1:21986301/68‑1 (MQ=255)
                                                    tGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATgg               >  1:19630077/1‑68 (MQ=255)
                                                    tGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATgg               >  1:30559072/1‑68 (MQ=255)
                                                    tGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATgg               >  1:19995179/1‑68 (MQ=255)
                                                       aCGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGaaa            >  1:12856179/1‑68 (MQ=255)
                                                        cgccgcGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAg           >  1:26086082/1‑68 (MQ=255)
                                                        cgccgcGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAg           <  1:8983930/68‑1 (MQ=255)
                                                           cgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACa        <  1:4026294‑M2/62‑1 (MQ=255)
                                                           cgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACa        <  1:26720325‑M2/62‑1 (MQ=255)
                                                            gcggcGGGCGCGTTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACa        <  1:13564178‑M2/62‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:16190176/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:15393327/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:14868200/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:25041245/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:12226445/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:11063567/68‑1 (MQ=255)
                                                                 gggcgCGGGGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:30708368/68‑1 (MQ=255)
                                                                 |                                                                   
GGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGT  >  CP009273/248295‑248427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.