| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 910575 = | 67 (0.170) | 5 (0.010) | 4/98 | NT | 8.3% | intergenic (‑262/+233) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | = 2222782 | 52 (0.150) | intergenic (+238/+135) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C | |||||
Only 100 of 264 total aligned reads displayed.
TTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGA > CP009273/910509‑910642 | tgcgcggtgccctcggcttatcccttacggctaccgggtcgggcgcgaggtaacatccctgtaaaacg > 1:26537314‑M1/67‑68 (MQ=255) gcggtgccctcggcttatcccttacggctaccgggtcgggcgcgaggtaacatccctgtaaaacgcg < 1:27348557‑M1/4‑1 (MQ=255) ggtgccctcggcttatcccttacggctaccgggtcgggcgcgaggtaacatccctgtaaaaCGCGcc > 1:31044127‑M1/62‑67 (MQ=255) ggtgccctcggcttatcccttacggctaccgggtcgggcgcgaggtaacatccctgtaaaaCGCGcc > 1:19914122‑M1/62‑67 (MQ=255) ggtgccctcggcttatcccttacggctaccgggtcgggcgcgaggtaacatccctgtaaaaCGCGcc > 1:7104009‑M1/62‑67 (MQ=255) ggtgccctcggcttataccttacggctaccgggtagggcgcgaggtaacatccctgtaaaaCgcgc < 1:12534091‑M1/5‑1 (MQ=255) gccctcggcttatcccttacggctaccgggtcgggcgcgaggtaacatccctgtaaaaCGCGCCcgc < 1:1098328‑M1/9‑2 (MQ=255) catgcATGGGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAggg < 1:20084572‑M2/63‑1 (MQ=255) ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:25417253‑M2/1‑68 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:3219780‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg < 1:31063695‑M2/67‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:3007825‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:28524908‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:28380686‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:17713437‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:20368843‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg < 1:2343662‑M2/67‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:22955011‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:3843934‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:8653840‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:8965432‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:573900‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:18995872‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:12093607‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:8023405‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:8540483‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:8886065‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:23581916‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:4533966‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:10079618‑M2/68‑1 (MQ=255) GGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCg < 1:26736748‑M2/67‑1 (MQ=255) GGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAg > 1:31682109‑M2/1‑68 (MQ=255) GGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAg > 1:14630262‑M2/1‑68 (MQ=255) gCTGAGGGCGCGTATTACAGGCATGTTACCTCGCCCCCGACCCGGTAGCCCAAAGGGATAAGTCGAgc > 1:29197685/1‑67 (MQ=11) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:9510406‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:21573598‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:3633024‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:18191897‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:12346913‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:6738019‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:5868513‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:17045368‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:16841464‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:13909772‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:1531271‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCGCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:23173011‑M2/1‑68 (MQ=255) TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc > 1:20756100‑M2/1‑68 (MQ=255) TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc > 1:23948779‑M2/1‑68 (MQ=255) TGAGGGCGCGTTTTAAAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc > 1:15373945‑M2/1‑68 (MQ=255) ggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCAcc > 1:7428761/1‑67 (MQ=35) ggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCAcc > 1:3431485/1‑67 (MQ=35) ggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCAcc > 1:17474720/1‑67 (MQ=35) cgcgTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACcgc < 1:12793803/67‑1 (MQ=35) cgTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCa > 1:14037221/1‑68 (MQ=35) tACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAgcggc < 1:29123768/68‑1 (MQ=35) cAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGa > 1:16834571/1‑68 (MQ=35) cAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGa > 1:19455826/1‑68 (MQ=35) aGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAt > 1:10327927/1‑68 (MQ=35) aGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAt > 1:8098946/1‑68 (MQ=35) aGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAt > 1:14723079/1‑68 (MQ=35) aGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAt > 1:18719952/1‑68 (MQ=35) gggATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtt > 1:10410450/1‑68 (MQ=35) gggATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtt > 1:27398289/1‑68 (MQ=35) gggATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtt > 1:27750943/1‑68 (MQ=35) gggATGTTACATCGCGCCCGCCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtt > 1:18444580/1‑68 (MQ=255) gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtttt > 1:10850537/1‑68 (MQ=35) gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtttt > 1:21775260/1‑68 (MQ=35) gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtttt > 1:6171532/1‑68 (MQ=35) gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtttt > 1:22177621/1‑68 (MQ=35) gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtttt > 1:2259921/1‑68 (MQ=35) gATGTTACCTCGCGCCAGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAtttt > 1:1617833/1‑68 (MQ=255) tGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGt > 1:11959298/1‑68 (MQ=35) tACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTc > 1:262077/1‑67 (MQ=35) aCCTCGCGCCCGACCCGGTAGCCGTACGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGc < 1:11497488/68‑1 (MQ=25) aCCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCg > 1:16461441/1‑67 (MQ=35) aCCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCg > 1:24528011/1‑67 (MQ=35) aCCTCGCGCCCGACCCGGTAGCCGTAAGGGAGAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCg > 1:2175438/1‑67 (MQ=25) ccTCGCGCCCGCCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:24748878/1‑68 (MQ=25) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTGGGGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:22075477/1‑68 (MQ=255) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:4352737/1‑68 (MQ=35) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:27114176/1‑68 (MQ=35) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:1049472/1‑68 (MQ=35) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:8763664/1‑68 (MQ=35) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:8372332/1‑68 (MQ=35) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:6379322/1‑68 (MQ=35) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:20835347/1‑68 (MQ=35) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:12931396/1‑68 (MQ=35) ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGcc > 1:13225640/1‑68 (MQ=35) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGGCa > 1:14774491/1‑68 (MQ=25) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:12404766/1‑68 (MQ=35) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:23564865/1‑68 (MQ=35) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:7861263/1‑68 (MQ=35) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:24448483/1‑68 (MQ=35) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:1562300/1‑68 (MQ=35) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:11021424/1‑68 (MQ=35) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:5093636/1‑68 (MQ=35) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:18002613/1‑68 (MQ=35) cTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:3919554/1‑68 (MQ=35) atCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCa > 1:1428994/2‑68 (MQ=25) CGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCaga > 1:25282143‑M1/1‑68 (MQ=255) | TTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGA > CP009273/910509‑910642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |